Miyakogusa Predicted Gene

Lj0g3v0286159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286159.1 Non Characterized Hit- tr|I1L775|I1L775_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,58.33,0.000000000004,no description,Nucleotide-binding,
alpha-beta plait; coiled-coil,NULL; RNA-binding domain,
RBD,NULL;,CUFF.19089.1
         (229 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    82   5e-16
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    64   1e-10
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    64   1e-10
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    64   1e-10
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    64   1e-10
Medtr3g050860.1 | acetyltransferase (GNAT) domain protein | LC |...    59   5e-09

>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:13375682-13364027 | 20130731
          Length = 668

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 86/187 (45%), Gaps = 31/187 (16%)

Query: 72  LPPPKNGKR--EGDDEKQANTKKQRTGEVIEEQKNKEKINTHY----------------- 112
           +PPP  GKR  E +DEK+  TKKQ+  EV+E ++ KE+ ++ Y                 
Sbjct: 14  IPPPNIGKRQCEDEDEKEVITKKQKIEEVVEMKEIKEETDSDYLKIGEDEDRKEVITMKE 73

Query: 113 ---------SEKDKKPESKKREPATSCRSLESTXXXXXXXXXXXXXXXXNHVNXXXXXXX 163
                    SE DKK E+K  + AT C   ES                 N  +       
Sbjct: 74  IKEEIISDDSEHDKKLEAKN-DSATGCGPSESLDDVISDSDSHRSSGEDNP-DDSESPEY 131

Query: 164 XXXXXXXXXXXXXXXCPKTPTTMKGKDAP-KTIYVRNLSYSVERADLESLFKDCGEVVDV 222
                            +TP T+  KDAP KTI VRNLSYSVER D+E +FKDCGEVVDV
Sbjct: 132 IGEEVEEKVSEAHQERHETPVTINEKDAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDV 191

Query: 223 HLHTDSE 229
             +TD E
Sbjct: 192 RFNTDRE 198



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 42/51 (82%), Gaps = 1/51 (1%)

Query: 180 PKTPTTMKGKD-APKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
           PK+P T    + A KTIYVRNLSY+VER+D+E++FKDCGE+VD+ LHTD E
Sbjct: 279 PKSPATPNETNVASKTIYVRNLSYTVERSDMENIFKDCGEIVDIRLHTDRE 329



 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%), Gaps = 1/40 (2%)

Query: 180 PKTPTTMKGK-DAPKTIYVRNLSYSVERADLESLFKDCGE 218
           P+TP T K K DA KT+ VRNLS+ V+RA++ES+FKDCGE
Sbjct: 437 PETPATQKEKNDASKTVCVRNLSFDVQRAEIESIFKDCGE 476


>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567463-28562229 | 20130731
          Length = 623

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 179 CPKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
            P TP T       KT++V NLS+SV+R+D+E  F+DCGEVVDV   +D E
Sbjct: 350 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 400


>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 588

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 179 CPKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
            P TP T       KT++V NLS+SV+R+D+E  F+DCGEVVDV   +D E
Sbjct: 315 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 365


>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 635

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 179 CPKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
            P TP T       KT++V NLS+SV+R+D+E  F+DCGEVVDV   +D E
Sbjct: 362 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 412


>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr4:28567458-28562229 | 20130731
          Length = 600

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 179 CPKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
            P TP T       KT++V NLS+SV+R+D+E  F+DCGEVVDV   +D E
Sbjct: 327 APNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 377


>Medtr3g050860.1 | acetyltransferase (GNAT) domain protein | LC |
           chr3:20039441-20042747 | 20130731
          Length = 362

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 180 PKTPTTMKGKDAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHL 224
           P TP T K     KT+YV NLS+SV+++D+E+ F+ CGEVVDV L
Sbjct: 254 PNTPATKKFNSRVKTLYVGNLSFSVQKSDIENFFRVCGEVVDVRL 298