Miyakogusa Predicted Gene

Lj0g3v0285849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285849.1 tr|A5X7X9|A5X7X9_PERAE MADS-box transcription
factor Pe.am.AGL6.2 (Fragment) OS=Persea americana PE=,48.51,4e-19,
,gene.g22234.t1.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g075850.1 | MADS-box transcription factor | HC | chr7:2847...   152   6e-38
Medtr8g033270.1 | MADS-box transcription factor | HC | chr8:1281...   148   1e-36

>Medtr7g075850.1 | MADS-box transcription factor | HC |
           chr7:28470159-28476820 | 20130731
          Length = 250

 Score =  152 bits (384), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 85/105 (80%), Gaps = 5/105 (4%)

Query: 1   MIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSST----SAAGTSNFPFHPA 56
           M+EQMEEL+ +ERHLGD+NKQL+ KLES+G+N K +E+LWSST    + AG  NFPF P+
Sbjct: 147 MVEQMEELKRKERHLGDINKQLRFKLESDGFNLKAIESLWSSTHSATAVAGGGNFPFQPS 206

Query: 57  QSNPMDCQPEPFLQIGYHQYVQAESSSIPKNSMTCETNFMHGWML 101
           ++NPMDCQ EPFLQIGY  YVQAE+SS PKN M  ET+F+ GWML
Sbjct: 207 ETNPMDCQTEPFLQIGYQNYVQAEASSAPKN-MVGETSFIQGWML 250


>Medtr8g033270.1 | MADS-box transcription factor | HC |
           chr8:12812091-12807414 | 20130731
          Length = 251

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 82/107 (76%), Gaps = 7/107 (6%)

Query: 1   MIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSSTSAAGTSNFPFHPAQSNP 60
           MIEQMEELR RERHLGDLNKQL++KLE EG+N K ME+LWSS S AG  NF F   Q+NP
Sbjct: 146 MIEQMEELRKRERHLGDLNKQLRIKLEGEGFNLKAMESLWSSNSVAGNCNFTFQQPQTNP 205

Query: 61  ----MDCQPEPFLQIGY--HQYVQAESSSIPKNSMTCETNFMHGWML 101
               MD Q EPFLQIGY  +QYVQAE S++ K SM CETNFM GWML
Sbjct: 206 MNMSMDIQAEPFLQIGYQQYQYVQAEPSNVSK-SMACETNFMQGWML 251