Miyakogusa Predicted Gene

Lj0g3v0285439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285439.1 Non Characterized Hit- tr|I3T4U9|I3T4U9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.17,0,RIBOSOMAL_L34E,Ribosomal protein L34e, conserved site;
60S RIBOSOMAL PROTEIN L34,Ribosomal protein L,CUFF.19105.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g040570.1 | 60S ribosomal L34-like protein | HC | chr5:178...   192   5e-50
Medtr7g010150.1 | 60S ribosomal L34-like protein | HC | chr7:242...   192   5e-50
Medtr8g467460.1 | 60S ribosomal L34-like protein | HC | chr8:242...   192   9e-50
Medtr7g011050.1 | 60S ribosomal L34-like protein | HC | chr7:286...   123   5e-29

>Medtr5g040570.1 | 60S ribosomal L34-like protein | HC |
          chr5:17828419-17825776 | 20130731
          Length = 120

 Score =  192 bits (488), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 95/95 (100%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95


>Medtr7g010150.1 | 60S ribosomal L34-like protein | HC |
          chr7:2420735-2418553 | 20130731
          Length = 120

 Score =  192 bits (488), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 95/95 (100%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95


>Medtr8g467460.1 | 60S ribosomal L34-like protein | HC |
          chr8:24242180-24246164 | 20130731
          Length = 120

 Score =  192 bits (487), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 94/95 (98%), Positives = 95/95 (100%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT
Sbjct: 1  MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
          EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95


>Medtr7g011050.1 | 60S ribosomal L34-like protein | HC |
          chr7:2864944-2864588 | 20130731
          Length = 102

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 67/95 (70%), Gaps = 16/95 (16%)

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
          MV R TY  RH+Y TK NQHRVVKTPGG+LVY TTKKRAS P CP               
Sbjct: 1  MVHRFTYCNRHTYTTKFNQHRVVKTPGGRLVYHTTKKRASEPMCP--------------- 45

Query: 61 EYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAF 95
           YKRSRLPRNR TVN AYGG+LSGGAVRE IIRAF
Sbjct: 46 -YKRSRLPRNRSTVNCAYGGILSGGAVREMIIRAF 79