Miyakogusa Predicted Gene

Lj0g3v0285289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0285289.1 Non Characterized Hit- tr|I1JBV0|I1JBV0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,58.97,0.00000000003,seg,NULL,CUFF.19040.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g037050.1 | cofactor assembly of complex protein C, putati...    55   2e-08

>Medtr5g037050.1 | cofactor assembly of complex protein C,
          putative | HC | chr5:16174477-16171323 | 20130731
          Length = 276

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 1  MEAGTAFRVVGVVT-VNTHXXXXXXXFKKSKTTAFQXXXXXXXXXXXXXXXYRGPKPKRD 59
          MEAGT  RV+  +    TH             TAF                +R P PKRD
Sbjct: 1  MEAGTTLRVLFTLPHTKTHIPIFISNRTSKPKTAFTLSSPSTSSYSSTVHSFRTPNPKRD 60

Query: 60 FLADWVSQNDDVVRTL 75
          FL DWVSQNDDVVR L
Sbjct: 61 FLPDWVSQNDDVVRPL 76