Miyakogusa Predicted Gene

Lj0g3v0284489.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284489.2 tr|G7KLG3|G7KLG3_MEDTR Defensin/CCP-like protein
OS=Medicago truncatula GN=MTR_6g052330 PE=4 SV=1,70.85,0,seg,NULL;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Herpes_UL52,DNA primase,CUFF.18970.2
         (616 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g052330.1 | DNA primase | HC | chr6:18262468-18271697 | 20...   952   0.0  
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20...   691   0.0  

>Medtr6g052330.1 | DNA primase | HC | chr6:18262468-18271697 |
           20130731
          Length = 632

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/614 (75%), Positives = 513/614 (83%), Gaps = 12/614 (1%)

Query: 3   DVDRLFACFKCGLTPPXXXXXXXXXXXXXXXQGSSKHELSLESPDSGSVGRERKTSLVSS 62
           DVDRLFACFKCG++PP                       + ESP+ GS+GRE KT L   
Sbjct: 12  DVDRLFACFKCGISPPKSALIERKRRKRKLENNG----FAAESPNQGSIGREEKTPLSRI 67

Query: 63  NTTNAESSVEKFKSAVTKTK---RGKHISPVVFYGSPQGVPPKKPTRFLWRLLREIRLDL 119
            TTN ESS+EK KSA+ KTK     K ISPVVFYGSP GVPPKKPTR LWRLL EIR+DL
Sbjct: 68  KTTNLESSIEKLKSAIAKTKSCSNRKQISPVVFYGSPHGVPPKKPTR-LWRLLHEIRIDL 126

Query: 120 SQPNKLNLRKEVWTTFPRQDEAMKFAKGQEDVHVFSYQDHFTGKRRFLVSTYTEFWRRYK 179
           SQ NK N+RKEVW TFPRQDEA+ FAKGQEDVH+FSYQ+HF G+RRFLVSTYTEFWRRYK
Sbjct: 127 SQRNKQNIRKEVWFTFPRQDEAINFAKGQEDVHLFSYQNHFNGQRRFLVSTYTEFWRRYK 186

Query: 180 SMDSKFRHHYEVIQEGLPCHLYFDLEFNKRVNIGRNGDEMVDLLISVVLEALHEKYAIHG 239
           +MDSKFRHHYEVIQEGLPCHLYFDLEFN++VN+G+NGDEMVDLLISVVLEALHEKY IHG
Sbjct: 187 NMDSKFRHHYEVIQEGLPCHLYFDLEFNRKVNVGKNGDEMVDLLISVVLEALHEKYEIHG 246

Query: 240 DHDWIVELDSSTEDKFSRHLIIRIPKASFKDNTHAGAFVSEICSRILTARGKDRSFEKLF 299
           DHDWIVELDSSTEDKFSRHLIIRIPKA+FKDN+HAGAFVSEICSRIL ARGKD+S+EKLF
Sbjct: 247 DHDWIVELDSSTEDKFSRHLIIRIPKAAFKDNSHAGAFVSEICSRILNARGKDKSYEKLF 306

Query: 300 VVKESSCNESASQLFVDTAVYTRNRCFRLHLSSKAGKRSVLLPTKRFKCKNLGEEDVFMA 359
           + K+SS NESASQLFVDTAVYTRNRCFRLHLSSKAGK S+LLPT+RFKCKNL EED+FMA
Sbjct: 307 IAKDSSTNESASQLFVDTAVYTRNRCFRLHLSSKAGKSSILLPTERFKCKNLSEEDMFMA 366

Query: 360 SLICKIDAGCEKLLVCKTDLDCVKTLHFDTEVNGNLENSSQIPPEFTWNTCTSDVSTTYL 419
           SLIC +DA C KLLVCK DLDCVKTLHFDTE+NGN+ +S Q   EF  NTCTSDVSTTY 
Sbjct: 367 SLICNMDADCGKLLVCKPDLDCVKTLHFDTELNGNVGHSVQSHTEFALNTCTSDVSTTYF 426

Query: 420 MGKSPFPFLDKFILSVASVGNIPGNIHSWYFFSEFGLIVYSMTKNRYCERIGRHHKSNNV 479
           MGKSPFP L++FILSVASVGNIPG IHSWY FSEFGL+VYSM KNRYCERIGR HKSNNV
Sbjct: 427 MGKSPFPRLEEFILSVASVGNIPGKIHSWYLFSEFGLMVYSMIKNRYCERIGRPHKSNNV 486

Query: 480 IYVVDLRRAVYYQKCHDPDCRGYRSPLREIPVHVFSNPSVDFGSSGMIGDKQPVDDEWRH 539
           IYVVDLR AVYYQKCHDPDCRGYRS  R IPVHV +NPSV  GSSGM+ DK   +DE  H
Sbjct: 487 IYVVDLRMAVYYQKCHDPDCRGYRSSSRPIPVHVLANPSVVIGSSGMLDDKHS-EDEQGH 545

Query: 540 QLDDNGKQSCLQYEGSIEDNSNDSWWLEAIQVAEDMEKENKQQITQLSSMEAIDDGDEEW 599
           Q +DN K + LQYE ++EDN +DSWWLEAI+V E++  ENK+  T+L S EAIDDGDEEW
Sbjct: 546 QPNDN-KPNFLQYEDTVEDNYSDSWWLEAIKVVEEV--ENKKTATELCSKEAIDDGDEEW 602

Query: 600 WQAAEITASQAELS 613
           W A E TASQ EL+
Sbjct: 603 WLAVESTASQVELT 616


>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
           20130731
          Length = 665

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/438 (75%), Positives = 370/438 (84%), Gaps = 4/438 (0%)

Query: 115 IRLDLSQPNKLNLR--KEVWTTFPRQDEAMKFAKGQEDVHVFSYQDHFTGKRRFLVSTYT 172
           I L+ S P  L  +  KEVW TF +Q+EA+KFAKGQEDVH+F YQDH  G RRFLV+TYT
Sbjct: 226 IYLNPSFPEALKFKEGKEVWFTFSKQNEAIKFAKGQEDVHLFCYQDHLNGYRRFLVTTYT 285

Query: 173 EFWRRYKSMDSKFRHHYEVIQEGLPCHLYFDLEFNKRVNIGRNGDEMVDLLISVVLEALH 232
           EFW+RYK+MDSK RH YEVIQEGLPCHLYFDLEFN++VN+G+NGDEMV+LLIS VLEALH
Sbjct: 286 EFWQRYKTMDSKTRHFYEVIQEGLPCHLYFDLEFNRKVNVGKNGDEMVNLLISTVLEALH 345

Query: 233 EKYAIHGDHDWIVELDSSTEDKFSRHLIIRIPKASFKDNTHAGAFVSEICSRILTARGKD 292
           EKY I GD DWIVELDSSTEDKFSRHLIIRIPKA+FKDN+HAGAFVSEICSRIL ARGKD
Sbjct: 346 EKYEILGDQDWIVELDSSTEDKFSRHLIIRIPKAAFKDNSHAGAFVSEICSRILNARGKD 405

Query: 293 RSFEKLFVVKESSCNESASQLFVDTAVYTRNRCFRLHLSSKAGKRSVLLPTKRFKCKNLG 352
           +S+EKLF+ K+S  NES  QLFVD AVY+RNRCFRLHLSSKA K S+LLPT+RFKCKNLG
Sbjct: 406 KSYEKLFIAKDSITNESVGQLFVDNAVYSRNRCFRLHLSSKAEKTSILLPTERFKCKNLG 465

Query: 353 --EEDVFMASLICKIDAGCEKLLVCKTDLDCVKTLHFDTEVNGNLENSSQIPPEFTWNTC 410
             EED+FMASLIC +D  C +LLV K D DCVKT HFDT++N N+ NS Q  PEFT NTC
Sbjct: 466 QSEEDIFMASLICNMDVDCGELLVGKPDSDCVKTQHFDTKLNCNVGNSVQSHPEFTLNTC 525

Query: 411 TSDVSTTYLMGKSPFPFLDKFILSVASVGNIPGNIHSWYFFSEFGLIVYSMTKNRYCERI 470
           TSDVSTTY  GKSPFP LD+FILSVAS+GNIPG IHSWY +SE G +VY+MTKNRYCERI
Sbjct: 526 TSDVSTTYYKGKSPFPSLDEFILSVASMGNIPGKIHSWYLYSESGFMVYNMTKNRYCERI 585

Query: 471 GRHHKSNNVIYVVDLRRAVYYQKCHDPDCRGYRSPLREIPVHVFSNPSVDFGSSGMIGDK 530
           GRHHKSNNV+YVVDLRR VYYQKCHDPDC+GYRS  R IPVHVFSN SV  GSSGM+  K
Sbjct: 586 GRHHKSNNVMYVVDLRREVYYQKCHDPDCKGYRSSSRPIPVHVFSNSSVVIGSSGMLDYK 645

Query: 531 QPVDDEWRHQLDDNGKQS 548
           QPV+DE  HQ DDN   S
Sbjct: 646 QPVEDEQGHQPDDNKPNS 663