Miyakogusa Predicted Gene

Lj0g3v0284489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284489.1 Non Characterized Hit- tr|G3UTQ3|G3UTQ3_MELGA
Uncharacterized protein OS=Meleagris gallopavo
GN=CCDC,44.8,9e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.18970.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g052330.1 | DNA primase | HC | chr6:18262468-18271697 | 20...   387   e-108
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20...   224   4e-59

>Medtr6g052330.1 | DNA primase | HC | chr6:18262468-18271697 |
           20130731
          Length = 632

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/254 (73%), Positives = 205/254 (80%), Gaps = 8/254 (3%)

Query: 3   DVDRLFACFKCGLTPPXXXXXXXXXXXXXXXQGSSKHELSLESPDSGSVGRERKTSLVSS 62
           DVDRLFACFKCG++PP                       + ESP+ GS+GRE KT L   
Sbjct: 12  DVDRLFACFKCGISPPKSALIERKRRKRKLENNG----FAAESPNQGSIGREEKTPLSRI 67

Query: 63  NTTNAESSVEKFKSAVTKTKRG---KHISPVVFYGSPQGVPPKKPTRFLWRLLREIRLDL 119
            TTN ESS+EK KSA+ KTK     K ISPVVFYGSP GVPPKKPTR LWRLL EIR+DL
Sbjct: 68  KTTNLESSIEKLKSAIAKTKSCSNRKQISPVVFYGSPHGVPPKKPTR-LWRLLHEIRIDL 126

Query: 120 SQPNKLNLRKEVWTTFPRQDEAMKFAKGQEDVHVFSYQDHFTGKRRFLVSTYTEFWRRYK 179
           SQ NK N+RKEVW TFPRQDEA+ FAKGQEDVH+FSYQ+HF G+RRFLVSTYTEFWRRYK
Sbjct: 127 SQRNKQNIRKEVWFTFPRQDEAINFAKGQEDVHLFSYQNHFNGQRRFLVSTYTEFWRRYK 186

Query: 180 SMDSKFRHHYEVIQEGLPCHLYFDLEFNKRVNIGRNGDEMVDLLISVVLEALHEKYAIHG 239
           +MDSKFRHHYEVIQEGLPCHLYFDLEFN++VN+G+NGDEMVDLLISVVLEALHEKY IHG
Sbjct: 187 NMDSKFRHHYEVIQEGLPCHLYFDLEFNRKVNVGKNGDEMVDLLISVVLEALHEKYEIHG 246

Query: 240 DHDWIVELDSSTEE 253
           DHDWIVELDSSTE+
Sbjct: 247 DHDWIVELDSSTED 260


>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
           20130731
          Length = 665

 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 120/141 (85%), Gaps = 2/141 (1%)

Query: 115 IRLDLSQPNKLNLR--KEVWTTFPRQDEAMKFAKGQEDVHVFSYQDHFTGKRRFLVSTYT 172
           I L+ S P  L  +  KEVW TF +Q+EA+KFAKGQEDVH+F YQDH  G RRFLV+TYT
Sbjct: 226 IYLNPSFPEALKFKEGKEVWFTFSKQNEAIKFAKGQEDVHLFCYQDHLNGYRRFLVTTYT 285

Query: 173 EFWRRYKSMDSKFRHHYEVIQEGLPCHLYFDLEFNKRVNIGRNGDEMVDLLISVVLEALH 232
           EFW+RYK+MDSK RH YEVIQEGLPCHLYFDLEFN++VN+G+NGDEMV+LLIS VLEALH
Sbjct: 286 EFWQRYKTMDSKTRHFYEVIQEGLPCHLYFDLEFNRKVNVGKNGDEMVNLLISTVLEALH 345

Query: 233 EKYAIHGDHDWIVELDSSTEE 253
           EKY I GD DWIVELDSSTE+
Sbjct: 346 EKYEILGDQDWIVELDSSTED 366