Miyakogusa Predicted Gene

Lj0g3v0284469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284469.1 Non Characterized Hit- tr|I1M729|I1M729_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50354
PE,22.42,7e-17,seg,NULL; FMN-binding split barrel,FMN-binding split
barrel-related,CUFF.18973.1
         (490 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g052360.1 | PPR superfamily protein, putative | HC | chr6:...   651   0.0  
Medtr6g052360.2 | PPR superfamily protein, putative | HC | chr6:...   527   e-150
Medtr6g052360.3 | PPR superfamily protein, putative | HC | chr6:...   390   e-108
Medtr5g090150.1 | PPR superfamily protein | HC | chr5:39269345-3...    96   9e-20

>Medtr6g052360.1 | PPR superfamily protein, putative | HC |
           chr6:18289368-18281384 | 20130731
          Length = 524

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/497 (65%), Positives = 362/497 (72%), Gaps = 11/497 (2%)

Query: 2   WSTEEVNGG-VGYVASCRLACSCG-FDAPWLRSKKYTSTPLTRRNKLVKNKIRASSEHPG 59
           W+ E+VNGG +GYVASCRLACSCG FDAPW+RSKKY  TP  RRNKLVKN+IR SS+HP 
Sbjct: 31  WNAEDVNGGGLGYVASCRLACSCGGFDAPWIRSKKYLGTPFPRRNKLVKNRIRVSSQHPS 90

Query: 60  SAQ---NKNEKASYHPSEDIAASTSENSGDARLTAAETSRTIIEVNSKATLMFSSIISDE 116
           S Q    KNEK SYHP E+IAAST E S D RLTAAETSRT+IEVNSKAT++FS+ ++DE
Sbjct: 91  SDQEPVKKNEKPSYHPFEEIAASTLEISEDVRLTAAETSRTVIEVNSKATMVFSTFVNDE 150

Query: 117 FHENIVWPDMPYLTDEHGNIYFQVKNSEDVLQSLTSENNFVQVIVGVDTMEMISEMDLSG 176
           +H+NIVWPD+PYLTDEHGNIYFQ K  ED+LQSLTSENNFVQVIVGVDTMEMISEMDLSG
Sbjct: 151 YHDNIVWPDLPYLTDEHGNIYFQAKPGEDILQSLTSENNFVQVIVGVDTMEMISEMDLSG 210

Query: 177 PSEIDFGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVAVLXXXXXXXXXXX 236
           PSEIDFGI                                    W+AVL           
Sbjct: 211 PSEIDFGIEEIDDEDTDDLDDSDVEDDVNENEDENEDYDSE---WLAVLSDDDELDDDDD 267

Query: 237 XLAD-WAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPACVAIQGIIRPAFVEDHSTI 295
                WAKLETMRFSHPM FA KL E+ASDDPIDWMEQPPACV  QG+IRPAF+E++S I
Sbjct: 268 EALADWAKLETMRFSHPMDFAKKLTEIASDDPIDWMEQPPACVVFQGVIRPAFIEENSPI 327

Query: 296 QNHISAKQXXXXXXXXXXXXXGENVSAINGHVDNSVSSRDNPGQQLENNRNSDIPFNETS 355
           Q H+SA Q              E+V AINGH  N  SS DN  Q++ENN N D P +ETS
Sbjct: 328 QKHLSANQSSTAEISKVTENKEESVGAINGHEHNKESSEDNASQKVENNENGDTPSDETS 387

Query: 356 FYRLEMIKIQVFSAQGDPTILELEDYMKAQPDXXXXXXXXXXXRLKAGG--EKTLQALKS 413
           FYRLE++KIQVFSA G P +LE+EDY KAQPD            LKA G  EKTLQALKS
Sbjct: 388 FYRLEIVKIQVFSAHGHPVVLEVEDYTKAQPDAIARSSSKIISHLKAAGESEKTLQALKS 447

Query: 414 LCWRCKGVQVEEAKLICVDSLGFDLRVCSGTQIQTLRITFKKRATSEYSAERQLNDLLFP 473
           LCW CKG+QVEEA+LICVDSLGFD+RVCSGTQ+QTLR  FKKRATSEYSAERQLND+LFP
Sbjct: 448 LCWICKGIQVEEAQLICVDSLGFDVRVCSGTQVQTLRFGFKKRATSEYSAERQLNDILFP 507

Query: 474 RTHPKHQKSKQAHQNEC 490
           R HPK QK+KQ HQNEC
Sbjct: 508 RNHPKQQKTKQTHQNEC 524


>Medtr6g052360.2 | PPR superfamily protein, putative | HC |
           chr6:18289348-18281384 | 20130731
          Length = 461

 Score =  527 bits (1358), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/431 (62%), Positives = 304/431 (70%), Gaps = 11/431 (2%)

Query: 2   WSTEEVNGG-VGYVASCRLACSCG-FDAPWLRSKKYTSTPLTRRNKLVKNKIRASSEHPG 59
           W+ E+VNGG +GYVASCRLACSCG FDAPW+RSKKY  TP  RRNKLVKN+IR SS+HP 
Sbjct: 31  WNAEDVNGGGLGYVASCRLACSCGGFDAPWIRSKKYLGTPFPRRNKLVKNRIRVSSQHPS 90

Query: 60  SAQ---NKNEKASYHPSEDIAASTSENSGDARLTAAETSRTIIEVNSKATLMFSSIISDE 116
           S Q    KNEK SYHP E+IAAST E S D RLTAAETSRT+IEVNSKAT++FS+ ++DE
Sbjct: 91  SDQEPVKKNEKPSYHPFEEIAASTLEISEDVRLTAAETSRTVIEVNSKATMVFSTFVNDE 150

Query: 117 FHENIVWPDMPYLTDEHGNIYFQVKNSEDVLQSLTSENNFVQVIVGVDTMEMISEMDLSG 176
           +H+NIVWPD+PYLTDEHGNIYFQ K  ED+LQSLTSENNFVQVIVGVDTMEMISEMDLSG
Sbjct: 151 YHDNIVWPDLPYLTDEHGNIYFQAKPGEDILQSLTSENNFVQVIVGVDTMEMISEMDLSG 210

Query: 177 PSEIDFGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVAVLX-XXXXXXXXX 235
           PSEIDFGI                                    W+AVL           
Sbjct: 211 PSEIDFGI---EEIDDEDTDDLDDSDVEDDVNENEDENEDYDSEWLAVLSDDDELDDDDD 267

Query: 236 XXLADWAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPACVAIQGIIRPAFVEDHSTI 295
             LADWAKLETMRFSHPM FA KL E+ASDDPIDWMEQPPACV  QG+IRPAF+E++S I
Sbjct: 268 EALADWAKLETMRFSHPMDFAKKLTEIASDDPIDWMEQPPACVVFQGVIRPAFIEENSPI 327

Query: 296 QNHISAKQXXXXXXXXXXXXXGENVSAINGHVDNSVSSRDNPGQQLENNRNSDIPFNETS 355
           Q H+SA Q              E+V AINGH  N  SS DN  Q++ENN N D P +ETS
Sbjct: 328 QKHLSANQSSTAEISKVTENKEESVGAINGHEHNKESSEDNASQKVENNENGDTPSDETS 387

Query: 356 FYRLEMIKIQVFSAQGDPTILELEDYMKAQPDXXXXXXXXXXXRLKAGG--EKTLQALKS 413
           FYRLE++KIQVFSA G P +LE+EDY KAQPD            LKA G  EKTLQALKS
Sbjct: 388 FYRLEIVKIQVFSAHGHPVVLEVEDYTKAQPDAIARSSSKIISHLKAAGESEKTLQALKS 447

Query: 414 LCWRCKGVQVE 424
           LCW CKG+QVE
Sbjct: 448 LCWICKGIQVE 458


>Medtr6g052360.3 | PPR superfamily protein, putative | HC |
           chr6:18285175-18281384 | 20130731
          Length = 325

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/328 (59%), Positives = 217/328 (66%), Gaps = 6/328 (1%)

Query: 166 MEMISEMDLSGPSEIDFGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVAVL 225
           MEMISEMDLSGPSEIDFGI                                    W+AVL
Sbjct: 1   MEMISEMDLSGPSEIDFGIEEIDDEDTDDLDDSDVEDDVNENEDENEDYDSE---WLAVL 57

Query: 226 XXXXXXXXXXXXLAD-WAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPACVAIQGII 284
                           WAKLETMRFSHPM FA KL E+ASDDPIDWMEQPPACV  QG+I
Sbjct: 58  SDDDELDDDDDEALADWAKLETMRFSHPMDFAKKLTEIASDDPIDWMEQPPACVVFQGVI 117

Query: 285 RPAFVEDHSTIQNHISAKQXXXXXXXXXXXXXGENVSAINGHVDNSVSSRDNPGQQLENN 344
           RPAF+E++S IQ H+SA Q              E+V AINGH  N  SS DN  Q++ENN
Sbjct: 118 RPAFIEENSPIQKHLSANQSSTAEISKVTENKEESVGAINGHEHNKESSEDNASQKVENN 177

Query: 345 RNSDIPFNETSFYRLEMIKIQVFSAQGDPTILELEDYMKAQPDXXXXXXXXXXXRLKAGG 404
            N D P +ETSFYRLE++KIQVFSA G P +LE+EDY KAQPD            LKA G
Sbjct: 178 ENGDTPSDETSFYRLEIVKIQVFSAHGHPVVLEVEDYTKAQPDAIARSSSKIISHLKAAG 237

Query: 405 --EKTLQALKSLCWRCKGVQVEEAKLICVDSLGFDLRVCSGTQIQTLRITFKKRATSEYS 462
             EKTLQALKSLCW CKG+QVEEA+LICVDSLGFD+RVCSGTQ+QTLR  FKKRATSEYS
Sbjct: 238 ESEKTLQALKSLCWICKGIQVEEAQLICVDSLGFDVRVCSGTQVQTLRFGFKKRATSEYS 297

Query: 463 AERQLNDLLFPRTHPKHQKSKQAHQNEC 490
           AERQLND+LFPR HPK QK+KQ HQNEC
Sbjct: 298 AERQLNDILFPRNHPKQQKTKQTHQNEC 325


>Medtr5g090150.1 | PPR superfamily protein | HC |
           chr5:39269345-39262550 | 20130731
          Length = 445

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 41/245 (16%)

Query: 239 ADWAKLETMRFSHPMHFANKLAEVASDDPIDWMEQPPACVAIQGIIRPAFVEDHSTIQNH 298
            +W   +     HP++F+  L +  + +    M+ P   V+I G +RPA+ ++ S I+  
Sbjct: 223 VNWGLSDNSNPVHPIYFSKCLEKAVNVEYDKRMDHPSNGVSILGYLRPAYADEESYIRMI 282

Query: 299 ISAKQXXXXXXXXXXXXXGENVSAINGHVDNSVSS--RDNPGQQLENNRNSDIPFNETSF 356
              +                         D+  SS  +D     + + R++++       
Sbjct: 283 YHTED------------------------DDGYSSDWKDFYSNSINDQRDANL-----IL 313

Query: 357 YRLEMIKIQ---VFSAQGDPTILELEDYMKAQPDXXXXXXXXXXXRLKAGGEKTLQALKS 413
           Y+LE+ KI+   V+ +Q + ++LE +D   A+PD           R+   G   LQA   
Sbjct: 314 YKLEIEKIKLHCVYGSQSEISLLEFQD---AEPDIIVYSTSAILERINRNGHDALQAF-- 368

Query: 414 LCWRCKGVQVEEAKLICVDSLGFDLRVCSGTQIQTLRITFKKRATSEYSAERQLNDLLFP 473
            C + KG+  EEA LI VD LG D+RV SG++++T R  FK +A S Y AE+Q+  LL+P
Sbjct: 369 -C-KKKGLDAEEAHLIGVDHLGVDVRVLSGSEVKTHRFAFKVQANSGYMAEKQIVQLLYP 426

Query: 474 RTHPK 478
           R+  K
Sbjct: 427 RSRRK 431



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 8/113 (7%)

Query: 67  KASYHPSEDIAASTSENSGDARLTAAETSRTIIEVNSKATLMFSSIISDEFHENIVWPDM 126
           K  YHP E++  S   +   ARL++AE +RT IE N  A L+F   +  E HE I W + 
Sbjct: 86  KQGYHPLEELKVSN--DLPPARLSSAEIARTTIEANKNALLVFPGSVHSEPHEQISWAEF 143

Query: 127 PYLTDEHGNIYFQVKNSEDVLQSLTSENNFVQVIVGV-----DTMEMISEMDL 174
            YL D+ G++YF++ +  ++L+   + N  V  ++G+     D    ISE D+
Sbjct: 144 QYLIDDFGDLYFEIFDDVNLLEDRGAHNP-VNALIGMDIPMYDNRRPISEYDI 195