Miyakogusa Predicted Gene

Lj0g3v0284459.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284459.1 Non Characterized Hit- tr|I1MPG5|I1MPG5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.93,0.00000000001,
,CUFF.18964.1
         (41 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g053090.1 | PPR containing plant protein | HC | chr6:19039...    47   3e-06

>Medtr6g053090.1 | PPR containing plant protein | HC |
          chr6:19039735-19044135 | 20130731
          Length = 354

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 28/41 (68%)

Query: 1  MLALTDFPLLIAKPFEEIKIPTSIRSTVVCAAKGKRPRYPR 41
          ML+LT+ PLLIAK +++I I       V  AAKG RPRYPR
Sbjct: 51 MLSLTNSPLLIAKSYQQINISNKRSIVVFAAAKGPRPRYPR 91