Miyakogusa Predicted Gene

Lj0g3v0284289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284289.1 Non Characterized Hit- tr|I1MAP1|I1MAP1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,42.93,1e-18,seg,NULL,CUFF.18946.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g060990.1 | hypothetical protein | LC | chr5:25371105-2537...    99   1e-21

>Medtr5g060990.1 | hypothetical protein | LC |
           chr5:25371105-25372028 | 20130731
          Length = 307

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 55/205 (26%)

Query: 7   LRNVISAESGLVVQNPLPPPDS-FLLGNNTDS----NGASSHKTSNEVWRDIVHSEQVYR 61
           L+N+IS ES  ++QNP P  +S F+ GN +DS    N    +KT NEVW +I   + V  
Sbjct: 46  LKNMISTESDQLIQNPTPDINSSFIYGNTSDSDNNLNETMCNKTINEVWSEINQQKNVIG 105

Query: 62  SVN-NNLQQSILGQTNLESFLARA------------------------MDP-MVMGSQPQ 95
           SV+ NNLQQSILG+T L++FLA A                        ++P +VM SQP+
Sbjct: 106 SVDHNNLQQSILGETTLDNFLAHAKAINVGNQENGHVIGDETQVPFIGVEPNLVMASQPE 165

Query: 96  EWLPLQV----------PGINFXXXXXXXXXXX----------IRRLCPDFSVYKPVYEN 135
           +WLPLQ+          P I+                      I  +CPDF V   VYEN
Sbjct: 166 DWLPLQMQMPIPLQMQMPSIHIHQQHQDHHHRLHQNRLHQNQPIIGMCPDFGVANSVYEN 225

Query: 136 QVLDIGYSE----NSMATMPSTCSD 156
           ++++IGYSE     +   + STC+D
Sbjct: 226 KLMEIGYSEIPIGATTTHLSSTCAD 250