Miyakogusa Predicted Gene
- Lj0g3v0284279.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0284279.2 Non Characterized Hit- tr|I1MAP2|I1MAP2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3608
PE=,91.16,0,Atg14,UV radiation resistance protein/autophagy-related
protein 14; seg,NULL; coiled-coil,NULL; SUBF,CUFF.18969.2
(475 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g061040.1 | DNA-directed RNA polymerase II | HC | chr5:253... 842 0.0
Medtr5g061040.2 | DNA-directed RNA polymerase II | HC | chr5:253... 749 0.0
Medtr5g061040.3 | DNA-directed RNA polymerase II | HC | chr5:253... 693 0.0
>Medtr5g061040.1 | DNA-directed RNA polymerase II | HC |
chr5:25394644-25385477 | 20130731
Length = 479
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/473 (86%), Positives = 424/473 (89%)
Query: 1 MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
MARK++NCAICEN NQ SICS+CVNYRLNEY +SLKSLKERRDSL +KLSEVLVRKGKGD
Sbjct: 1 MARKSTNCAICENLNQPSICSVCVNYRLNEYNSSLKSLKERRDSLYSKLSEVLVRKGKGD 60
Query: 61 DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
DQTNWRVL+HEKLAR +EKLRH+KEQV QGRAKI MSADLKLKYGVLESALS LEKNRV
Sbjct: 61 DQTNWRVLRHEKLARSREKLRHNKEQVTQGRAKIQAMSADLKLKYGVLESALSMLEKNRV 120
Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGE D CSGQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGEKGDDCSGQYD 180
Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
QICNARLPRALDPHSVPSEELSASLGYMVQLLNLV HNLAAPALHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVAHNLAAPALHNSGFAGSCSRIWQRD 240
Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXXXXXX 300
SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWS+KSSSNFGVASMESDRRPRLD
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSEKSSSNFGVASMESDRRPRLDSSGSSS 300
Query: 301 XXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATL 360
VQ+HKDLQKGISLLKKSVAC+T+YCYNSLC D+PSEASTFEAFAKLLATL
Sbjct: 301 FNYSLASSHSVQSHKDLQKGISLLKKSVACITAYCYNSLCFDIPSEASTFEAFAKLLATL 360
Query: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMDSTISSTTLLESAHSVPPMRIENYMPS 420
SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNM+S SSTTLLES HSVP RIENYMP+
Sbjct: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSANSSTTLLESTHSVPTTRIENYMPN 420
Query: 421 SGTSFLYATDLSDGKSECLFEGWDIVERXXXXXXXSQSEDVEHWTRAMFIDAK 473
S SFLY TD SD KSECL EGWDIVE SQSEDVEHWTRAMFIDAK
Sbjct: 421 SAASFLYPTDSSDRKSECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAK 473
>Medtr5g061040.2 | DNA-directed RNA polymerase II | HC |
chr5:25394644-25385496 | 20130731
Length = 430
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/410 (88%), Positives = 377/410 (91%)
Query: 1 MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
MARK++NCAICEN NQ SICS+CVNYRLNEY +SLKSLKERRDSL +KLSEVLVRKGKGD
Sbjct: 1 MARKSTNCAICENLNQPSICSVCVNYRLNEYNSSLKSLKERRDSLYSKLSEVLVRKGKGD 60
Query: 61 DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
DQTNWRVL+HEKLAR +EKLRH+KEQV QGRAKI MSADLKLKYGVLESALS LEKNRV
Sbjct: 61 DQTNWRVLRHEKLARSREKLRHNKEQVTQGRAKIQAMSADLKLKYGVLESALSMLEKNRV 120
Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGE D CSGQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGEKGDDCSGQYD 180
Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
QICNARLPRALDPHSVPSEELSASLGYMVQLLNLV HNLAAPALHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVAHNLAAPALHNSGFAGSCSRIWQRD 240
Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXXXXXX 300
SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWS+KSSSNFGVASMESDRRPRLD
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSEKSSSNFGVASMESDRRPRLDSSGSSS 300
Query: 301 XXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATL 360
VQ+HKDLQKGISLLKKSVAC+T+YCYNSLC D+PSEASTFEAFAKLLATL
Sbjct: 301 FNYSLASSHSVQSHKDLQKGISLLKKSVACITAYCYNSLCFDIPSEASTFEAFAKLLATL 360
Query: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMDSTISSTTLLESAHSVP 410
SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNM+S SSTTLLES HSVP
Sbjct: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSANSSTTLLESTHSVP 410
>Medtr5g061040.3 | DNA-directed RNA polymerase II | HC |
chr5:25394644-25385477 | 20130731
Length = 388
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/378 (88%), Positives = 348/378 (92%)
Query: 1 MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
MARK++NCAICEN NQ SICS+CVNYRLNEY +SLKSLKERRDSL +KLSEVLVRKGKGD
Sbjct: 1 MARKSTNCAICENLNQPSICSVCVNYRLNEYNSSLKSLKERRDSLYSKLSEVLVRKGKGD 60
Query: 61 DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
DQTNWRVL+HEKLAR +EKLRH+KEQV QGRAKI MSADLKLKYGVLESALS LEKNRV
Sbjct: 61 DQTNWRVLRHEKLARSREKLRHNKEQVTQGRAKIQAMSADLKLKYGVLESALSMLEKNRV 120
Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGE D CSGQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGEKGDDCSGQYD 180
Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
QICNARLPRALDPHSVPSEELSASLGYMVQLLNLV HNLAAPALHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVAHNLAAPALHNSGFAGSCSRIWQRD 240
Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXXXXXX 300
SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWS+KSSSNFGVASMESDRRPRLD
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSEKSSSNFGVASMESDRRPRLDSSGSSS 300
Query: 301 XXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATL 360
VQ+HKDLQKGISLLKKSVAC+T+YCYNSLC D+PSEASTFEAFAKLLATL
Sbjct: 301 FNYSLASSHSVQSHKDLQKGISLLKKSVACITAYCYNSLCFDIPSEASTFEAFAKLLATL 360
Query: 361 SSSKEVRSVFSLKMARSR 378
SSSKEVRSVFSLKMARSR
Sbjct: 361 SSSKEVRSVFSLKMARSR 378