Miyakogusa Predicted Gene

Lj0g3v0284279.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284279.2 Non Characterized Hit- tr|I1MAP2|I1MAP2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3608
PE=,91.16,0,Atg14,UV radiation resistance protein/autophagy-related
protein 14; seg,NULL; coiled-coil,NULL; SUBF,CUFF.18969.2
         (475 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g061040.1 | DNA-directed RNA polymerase II | HC | chr5:253...   842   0.0  
Medtr5g061040.2 | DNA-directed RNA polymerase II | HC | chr5:253...   749   0.0  
Medtr5g061040.3 | DNA-directed RNA polymerase II | HC | chr5:253...   693   0.0  

>Medtr5g061040.1 | DNA-directed RNA polymerase II | HC |
           chr5:25394644-25385477 | 20130731
          Length = 479

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/473 (86%), Positives = 424/473 (89%)

Query: 1   MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
           MARK++NCAICEN NQ SICS+CVNYRLNEY +SLKSLKERRDSL +KLSEVLVRKGKGD
Sbjct: 1   MARKSTNCAICENLNQPSICSVCVNYRLNEYNSSLKSLKERRDSLYSKLSEVLVRKGKGD 60

Query: 61  DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
           DQTNWRVL+HEKLAR +EKLRH+KEQV QGRAKI  MSADLKLKYGVLESALS LEKNRV
Sbjct: 61  DQTNWRVLRHEKLARSREKLRHNKEQVTQGRAKIQAMSADLKLKYGVLESALSMLEKNRV 120

Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
           EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGE  D CSGQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGEKGDDCSGQYD 180

Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
           QICNARLPRALDPHSVPSEELSASLGYMVQLLNLV HNLAAPALHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVAHNLAAPALHNSGFAGSCSRIWQRD 240

Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXXXXXX 300
           SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWS+KSSSNFGVASMESDRRPRLD      
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSEKSSSNFGVASMESDRRPRLDSSGSSS 300

Query: 301 XXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATL 360
                     VQ+HKDLQKGISLLKKSVAC+T+YCYNSLC D+PSEASTFEAFAKLLATL
Sbjct: 301 FNYSLASSHSVQSHKDLQKGISLLKKSVACITAYCYNSLCFDIPSEASTFEAFAKLLATL 360

Query: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMDSTISSTTLLESAHSVPPMRIENYMPS 420
           SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNM+S  SSTTLLES HSVP  RIENYMP+
Sbjct: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSANSSTTLLESTHSVPTTRIENYMPN 420

Query: 421 SGTSFLYATDLSDGKSECLFEGWDIVERXXXXXXXSQSEDVEHWTRAMFIDAK 473
           S  SFLY TD SD KSECL EGWDIVE        SQSEDVEHWTRAMFIDAK
Sbjct: 421 SAASFLYPTDSSDRKSECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAK 473


>Medtr5g061040.2 | DNA-directed RNA polymerase II | HC |
           chr5:25394644-25385496 | 20130731
          Length = 430

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/410 (88%), Positives = 377/410 (91%)

Query: 1   MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
           MARK++NCAICEN NQ SICS+CVNYRLNEY +SLKSLKERRDSL +KLSEVLVRKGKGD
Sbjct: 1   MARKSTNCAICENLNQPSICSVCVNYRLNEYNSSLKSLKERRDSLYSKLSEVLVRKGKGD 60

Query: 61  DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
           DQTNWRVL+HEKLAR +EKLRH+KEQV QGRAKI  MSADLKLKYGVLESALS LEKNRV
Sbjct: 61  DQTNWRVLRHEKLARSREKLRHNKEQVTQGRAKIQAMSADLKLKYGVLESALSMLEKNRV 120

Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
           EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGE  D CSGQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGEKGDDCSGQYD 180

Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
           QICNARLPRALDPHSVPSEELSASLGYMVQLLNLV HNLAAPALHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVAHNLAAPALHNSGFAGSCSRIWQRD 240

Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXXXXXX 300
           SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWS+KSSSNFGVASMESDRRPRLD      
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSEKSSSNFGVASMESDRRPRLDSSGSSS 300

Query: 301 XXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATL 360
                     VQ+HKDLQKGISLLKKSVAC+T+YCYNSLC D+PSEASTFEAFAKLLATL
Sbjct: 301 FNYSLASSHSVQSHKDLQKGISLLKKSVACITAYCYNSLCFDIPSEASTFEAFAKLLATL 360

Query: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMDSTISSTTLLESAHSVP 410
           SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNM+S  SSTTLLES HSVP
Sbjct: 361 SSSKEVRSVFSLKMARSRTCKQVQQLNKSVWNMNSANSSTTLLESTHSVP 410


>Medtr5g061040.3 | DNA-directed RNA polymerase II | HC |
           chr5:25394644-25385477 | 20130731
          Length = 388

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/378 (88%), Positives = 348/378 (92%)

Query: 1   MARKTSNCAICENSNQASICSICVNYRLNEYTTSLKSLKERRDSLSTKLSEVLVRKGKGD 60
           MARK++NCAICEN NQ SICS+CVNYRLNEY +SLKSLKERRDSL +KLSEVLVRKGKGD
Sbjct: 1   MARKSTNCAICENLNQPSICSVCVNYRLNEYNSSLKSLKERRDSLYSKLSEVLVRKGKGD 60

Query: 61  DQTNWRVLQHEKLARLKEKLRHSKEQVAQGRAKIGTMSADLKLKYGVLESALSTLEKNRV 120
           DQTNWRVL+HEKLAR +EKLRH+KEQV QGRAKI  MSADLKLKYGVLESALS LEKNRV
Sbjct: 61  DQTNWRVLRHEKLARSREKLRHNKEQVTQGRAKIQAMSADLKLKYGVLESALSMLEKNRV 120

Query: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGETKDGCSGQYD 180
           EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGE  D CSGQYD
Sbjct: 121 EQLEKFYPNLICTQSLGHVAITSERLHKQSVVIKQICKLFPQRRVVIEGEKGDDCSGQYD 180

Query: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVLHNLAAPALHNSGFAGSCSRIWQRD 240
           QICNARLPRALDPHSVPSEELSASLGYMVQLLNLV HNLAAPALHNSGFAGSCSRIWQRD
Sbjct: 181 QICNARLPRALDPHSVPSEELSASLGYMVQLLNLVAHNLAAPALHNSGFAGSCSRIWQRD 240

Query: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSDKSSSNFGVASMESDRRPRLDXXXXXX 300
           SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWS+KSSSNFGVASMESDRRPRLD      
Sbjct: 241 SYWDARPSSRSNEYPLFIPRQNYCSTSGENSWSEKSSSNFGVASMESDRRPRLDSSGSSS 300

Query: 301 XXXXXXXXXXVQTHKDLQKGISLLKKSVACVTSYCYNSLCLDVPSEASTFEAFAKLLATL 360
                     VQ+HKDLQKGISLLKKSVAC+T+YCYNSLC D+PSEASTFEAFAKLLATL
Sbjct: 301 FNYSLASSHSVQSHKDLQKGISLLKKSVACITAYCYNSLCFDIPSEASTFEAFAKLLATL 360

Query: 361 SSSKEVRSVFSLKMARSR 378
           SSSKEVRSVFSLKMARSR
Sbjct: 361 SSSKEVRSVFSLKMARSR 378