Miyakogusa Predicted Gene

Lj0g3v0284249.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284249.1 tr|B9GQC4|B9GQC4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_816607 PE=4
SV=1,49.19,2e-18,seg,NULL,CUFF.18948.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g028545.1 | nuclear transport factor 2 (NTF2) family prote...   131   1e-31
Medtr4g037255.1 | hypothetical protein | HC | chr4:13724996-1372...    81   2e-16

>Medtr8g028545.1 | nuclear transport factor 2 (NTF2) family protein
           | HC | chr8:10910627-10907087 | 20130731
          Length = 243

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/98 (70%), Positives = 76/98 (77%), Gaps = 10/98 (10%)

Query: 21  LVFPPKQQHH------HHLRIRCNGTNPNQQDDSQAQNNPLLKIAWYSSELLGIAASAFR 74
           L F PK QHH      H  +I+CNGTN NQ  +SQ Q N  LK+AWYSSELLGIAASAFR
Sbjct: 19  LFFAPKHQHHRNNTKIHRFQIQCNGTNQNQ--ESQPQTNAFLKVAWYSSELLGIAASAFR 76

Query: 75  SPSGVE--APPQRLLETIDRAAVVDTIKQDFQRSYFVT 110
           SPS  E  +PPQRLL+TIDRA+VVDTIKQDFQRSYFVT
Sbjct: 77  SPSDEEEASPPQRLLQTIDRASVVDTIKQDFQRSYFVT 114


>Medtr4g037255.1 | hypothetical protein | HC |
          chr4:13724996-13725256 | 20130731
          Length = 86

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 46/66 (69%), Gaps = 8/66 (12%)

Query: 21 LVFPPKQQHH------HHLRIRCNGTNPNQQDDSQAQNNPLLKIAWYSSELLGIAASAFR 74
          L F PKQQHH      H  +I+CNG N NQ  +SQ Q N  LK+AWYSSELLGIAASAFR
Sbjct: 23 LFFAPKQQHHRNNTKIHRFQIQCNGINQNQ--ESQLQTNAFLKVAWYSSELLGIAASAFR 80

Query: 75 SPSGVE 80
          SPS  E
Sbjct: 81 SPSDEE 86