Miyakogusa Predicted Gene

Lj0g3v0283989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0283989.1 tr|A9S173|A9S173_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162224,47.5,0.00000000000003,seg,NULL; FBOX,F-box
domain, cyclin-like,CUFF.18922.1
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g075190.1 | F-box protein | HC | chr8:31780833-31783471 | ...   196   8e-51
Medtr4g091100.1 | F-box SKIP27-like protein | HC | chr4:36063639...    70   9e-13
Medtr2g011800.1 | F-box protein | HC | chr2:2951690-2951098 | 20...    60   1e-09

>Medtr8g075190.1 | F-box protein | HC | chr8:31780833-31783471 |
           20130731
          Length = 264

 Score =  196 bits (499), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/141 (70%), Positives = 117/141 (82%), Gaps = 8/141 (5%)

Query: 23  SKNKYLKPGTLAQLRCNR--SSGSGGGKACTDLGKKRVAV-GLNSRE-----TVEKSPVM 74
           S  KYLKPGTLAQLRC++   SGSG G+ C D+GKKRV +  L   E       +KSP+M
Sbjct: 20  SGTKYLKPGTLAQLRCSKYLGSGSGAGRVCNDIGKKRVELLNLEKNEDHEGKVFDKSPLM 79

Query: 75  LSPVNLVRQNSLLGTPKTPRIEEPQSDSRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRI 134
           LSPVNLV+Q+S +GTPKTPRI+E QS+SRLESLP+D+LVK+LC LHHDQL+AVFHVS+RI
Sbjct: 80  LSPVNLVKQSSSVGTPKTPRIDECQSESRLESLPIDLLVKILCCLHHDQLRAVFHVSQRI 139

Query: 135 RKAVIVARQFHFNYTTPDRSR 155
           RKAVIVARQFHFNYTTPDRSR
Sbjct: 140 RKAVIVARQFHFNYTTPDRSR 160


>Medtr4g091100.1 | F-box SKIP27-like protein | HC |
           chr4:36063639-36065048 | 20130731
          Length = 161

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 11/102 (10%)

Query: 53  LGKKRVAVGLNSRETVEKSPVMLSPVNLVRQNSLLGTPKTPRIEEPQSDSRLESLPMDVL 112
           LG+KRV V  N+ E  E +PV    V L R  S        R +     SRLE+LP D+L
Sbjct: 23  LGRKRVVVS-NNDEAFESNPVT---VPLKRMCS-------GRFDTISEKSRLEALPQDLL 71

Query: 113 VKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRS 154
           V++LC + HD L+ +F+VS  I++A  +A+Q HF ++TP +S
Sbjct: 72  VRVLCGVDHDDLEQLFNVSTTIKEAGEIAKQMHFEFSTPKKS 113


>Medtr2g011800.1 | F-box protein | HC | chr2:2951690-2951098 |
           20130731
          Length = 120

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 39/53 (73%)

Query: 102 SRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRS 154
           S LE+LP D+L+ +LC + HD LK +FHVS+ IR+A ++  + HF ++TP ++
Sbjct: 21  SPLETLPQDILLHVLCGVDHDDLKQLFHVSKIIREATLIVEESHFKFSTPKKN 73