Miyakogusa Predicted Gene

Lj0g3v0283439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0283439.1 Non Characterized Hit- tr|I3SXX5|I3SXX5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0.00000002,
,CUFF.18881.1
         (68 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g007480.1 | ribosomal protein L28 | HC | chr1:390537-39403...    59   8e-10
Medtr1g007480.2 | ribosomal protein L28 | HC | chr1:390617-39403...    59   8e-10

>Medtr1g007480.1 | ribosomal protein L28 | HC | chr1:390537-394034
          | 20130731
          Length = 232

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/27 (88%), Positives = 27/27 (100%)

Query: 1  MGRAKRGLFAGRHIQFGNTVSEDGGNK 27
          MGRAKRGLFAG+HIQFGN+VSEDGGN+
Sbjct: 40 MGRAKRGLFAGKHIQFGNSVSEDGGNR 66


>Medtr1g007480.2 | ribosomal protein L28 | HC | chr1:390617-394034
          | 20130731
          Length = 232

 Score = 59.3 bits (142), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/27 (88%), Positives = 27/27 (100%)

Query: 1  MGRAKRGLFAGRHIQFGNTVSEDGGNK 27
          MGRAKRGLFAG+HIQFGN+VSEDGGN+
Sbjct: 40 MGRAKRGLFAGKHIQFGNSVSEDGGNR 66