Miyakogusa Predicted Gene

Lj0g3v0282969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0282969.1 Non Characterized Hit- tr|D5AAS4|D5AAS4_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,42.74,0.000000000002, ,CUFF.18845.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g117410.1 | ribosomal protein S18 | HC | chr7:48539977-485...   180   4e-46
Medtr7g117410.2 | ribosomal protein S18 | HC | chr7:48539977-485...   180   5e-46

>Medtr7g117410.1 | ribosomal protein S18 | HC |
           chr7:48539977-48533879 | 20130731
          Length = 260

 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 113/158 (71%), Gaps = 3/158 (1%)

Query: 1   MKIVSLALRSLSGNLSHRFHQTRGLSLWNFSDNGPADQKTNKSDSLDEYEQRMFGSDRYS 60
           MK+ S+ALRS     +     TR LS W F  NG A+Q+ NKS+S DE+EQR+F     S
Sbjct: 2   MKMSSVALRSFKFKSNFSLSTTRNLSTWLFPGNGNANQQVNKSESPDEFEQRIFSPGGTS 61

Query: 61  KIDAIFDRHNRQGKTQDRSSSVDAGRSMIDDLEQSFDTLSDGLDGKLKEAANYFEFDPEE 120
           K D I D+ N+Q + +DRS        ++DDLEQ+FDTLSDG+DGKL  AA YFE+DP+E
Sbjct: 62  KTDFILDKLNQQTRGRDRSG---GSSQLLDDLEQTFDTLSDGMDGKLNNAARYFEYDPDE 118

Query: 121 IDKEDYSFRYDTTFHPGSTYNAKDLDLTKPGVQKPPIR 158
           I+K+DYS+RYDTTFH GSTYN KDLDLTKP  +KPPIR
Sbjct: 119 IEKDDYSYRYDTTFHRGSTYNTKDLDLTKPAARKPPIR 156


>Medtr7g117410.2 | ribosomal protein S18 | HC |
           chr7:48539977-48535010 | 20130731
          Length = 183

 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 113/158 (71%), Gaps = 3/158 (1%)

Query: 1   MKIVSLALRSLSGNLSHRFHQTRGLSLWNFSDNGPADQKTNKSDSLDEYEQRMFGSDRYS 60
           MK+ S+ALRS     +     TR LS W F  NG A+Q+ NKS+S DE+EQR+F     S
Sbjct: 2   MKMSSVALRSFKFKSNFSLSTTRNLSTWLFPGNGNANQQVNKSESPDEFEQRIFSPGGTS 61

Query: 61  KIDAIFDRHNRQGKTQDRSSSVDAGRSMIDDLEQSFDTLSDGLDGKLKEAANYFEFDPEE 120
           K D I D+ N+Q + +DRS        ++DDLEQ+FDTLSDG+DGKL  AA YFE+DP+E
Sbjct: 62  KTDFILDKLNQQTRGRDRSG---GSSQLLDDLEQTFDTLSDGMDGKLNNAARYFEYDPDE 118

Query: 121 IDKEDYSFRYDTTFHPGSTYNAKDLDLTKPGVQKPPIR 158
           I+K+DYS+RYDTTFH GSTYN KDLDLTKP  +KPPIR
Sbjct: 119 IEKDDYSYRYDTTFHRGSTYNTKDLDLTKPAARKPPIR 156