Miyakogusa Predicted Gene

Lj0g3v0282249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0282249.1 Non Characterized Hit- tr|A5BUV6|A5BUV6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,61.29,2,coiled-coil,NULL; Ribonuclease H-like,Ribonuclease H-like
domain; SUBFAMILY NOT NAMED,NULL; UNCHARAC,CUFF.18779.1
         (423 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034530.1 | hypothetical protein | LC | chr5:14993712-1499...    54   3e-07

>Medtr5g034530.1 | hypothetical protein | LC |
          chr5:14993712-14993306 | 20130731
          Length = 111

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 1  MRCCAHILNLVVSDGLKVQQSSIDYIRNAVRYVRSSSQRTKRFKECIEAELINSKSLVCL 60
          MRCCAH+LNLVV DGLK   SS+  +RNAV++V       + F+      ++N++S    
Sbjct: 34 MRCCAHVLNLVVIDGLKYVHSSVSRVRNAVQFVDLHPIGLQSFRTVYNFLVLNARSWYVF 93

Query: 61 DVAT 64
           + T
Sbjct: 94 QLGT 97