Miyakogusa Predicted Gene

Lj0g3v0281969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0281969.1 Non Characterized Hit- tr|I1N2E0|I1N2E0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,46.02,3e-18,seg,NULL,CUFF.18752.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g022370.1 | Dof domain zinc finger protein | HC | chr4:743...    82   4e-16

>Medtr4g022370.1 | Dof domain zinc finger protein | HC |
           chr4:7434526-7436301 | 20130731
          Length = 364

 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 84/181 (46%), Gaps = 31/181 (17%)

Query: 2   FMAPLHHQFS---EFGSGDMMGLNYGLRYCPISGPMXXXXXXXXXXXXXXXXXXXXXXXX 58
           FM PLHH FS   +F  G  +GLNYG  Y    G +                        
Sbjct: 190 FMTPLHHNFSNPNDFVGGGDLGLNYGFSYM---GGVGDLGSALGGNSILSSSGLEQWRMP 246

Query: 59  XXXVPQMQQFPFLAGLEGSLVGLYHHPFEGSVHXXXXXXXXXXXXXXXXXLRPKV-STSG 117
                Q  QFPFLA LEG+   LY  PFEG+V                  +RPKV STSG
Sbjct: 247 MSMTHQQHQFPFLANLEGTNSNLY--PFEGNVQNHEMITSGGY-------VRPKVISTSG 297

Query: 118 LMTQFASVKMEGSRELNNLSSPFLG----TNNINPPSEQYW-----SGTNSADWTD-IIG 167
           +MTQ ASVKME S     ++  FLG     NN N  SEQ+W     +G ++A+WTD + G
Sbjct: 298 IMTQLASVKMEDS-----INRGFLGINTSNNNSNQGSEQFWNSAVVTGNSAANWTDHVSG 352

Query: 168 F 168
           F
Sbjct: 353 F 353