Miyakogusa Predicted Gene

Lj0g3v0281219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0281219.1 Non Characterized Hit- tr|I1MVR8|I1MVR8_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,85.78,0,seg,NULL;
POLYPRENYL_SYNTHASE_2,Polyprenyl synthetase;
POLYPRENYL_SYNTHASE_1,Polyprenyl synthetase; ,CUFF.18713.1
         (419 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g095055.1 | geranylgeranyl pyrophosphate synthase | HC | c...   707   0.0  
Medtr4g095055.2 | geranylgeranyl pyrophosphate synthase | HC | c...   501   e-142
Medtr2g072470.1 | solanesyl diphosphate synthase | HC | chr2:305...   234   1e-61
Medtr5g019460.1 | geranylgeranyl pyrophosphate synthase | HC | c...    86   5e-17
Medtr8g078070.1 | geranylgeranyl pyrophosphate synthase | HC | c...    85   1e-16

>Medtr4g095055.1 | geranylgeranyl pyrophosphate synthase | HC |
           chr4:39596236-39604873 | 20130731
          Length = 417

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/420 (83%), Positives = 375/420 (89%), Gaps = 4/420 (0%)

Query: 1   MLFSRISRNLRGSFNSCRWFLSVGDQNHRFLFSHNVQSHTDSTQQVIRSLIFSKGFPALY 60
           MLFSRISRNLRG+FN  R FLS+G+ N RFLFSH   S  DST+QV+RSL+FSKG PALY
Sbjct: 1   MLFSRISRNLRGAFNGYRRFLSIGENNRRFLFSH---SPADSTEQVMRSLVFSKGMPALY 57

Query: 61  SSRHQIHHQ-SSPIVEDEHDPFSLVADELSILGNKLREMVVAEVPKLASAAEYFFKMGVE 119
           SSR+ IHH  SS +VEDE DPFSLVADELS +GNKLREMVVA+VPKLASAAEYFFKMGVE
Sbjct: 58  SSRYHIHHHTSSSLVEDELDPFSLVADELSFIGNKLREMVVAKVPKLASAAEYFFKMGVE 117

Query: 120 GKRFRPTVLLLMSTALNXXXXXXXXXXXXXXTMTTDLRSRQQRIAEITEMIHVASLLHDD 179
           GKRFRPTVLLLMSTALN              T TTDLRSRQQRIAEITEMIHVASLLHDD
Sbjct: 118 GKRFRPTVLLLMSTALNLPIPKAPPPMELGGTTTTDLRSRQQRIAEITEMIHVASLLHDD 177

Query: 180 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTG 239
           VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLA+VVEHLVTG
Sbjct: 178 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAEVVEHLVTG 237

Query: 240 ETMQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGL 299
           E MQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKA+AILAGQTAEVA+LAFEYGKNLGL
Sbjct: 238 EIMQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKAIAILAGQTAEVAVLAFEYGKNLGL 297

Query: 300 AFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVD 359
           AFQLIDDVLDFTGTSASLGKGSLSDI+HGIVTAPILFAMEEFPQLRAIVE+GFENPENV+
Sbjct: 298 AFQLIDDVLDFTGTSASLGKGSLSDIQHGIVTAPILFAMEEFPQLRAIVEEGFENPENVN 357

Query: 360 LALEYLGKSRGIQRTKELXXXXXXXXXXXIDSLPESDDEEVRRSRKALIDLTHIVITRTK 419
           +AL+YLGKSRGIQ+TKEL           IDSLPE+D+EEVR+SRKAL++LT IVITRTK
Sbjct: 358 IALDYLGKSRGIQKTKELAMKHASLAAEAIDSLPENDNEEVRKSRKALVELTQIVITRTK 417


>Medtr4g095055.2 | geranylgeranyl pyrophosphate synthase | HC |
           chr4:39596236-39604873 | 20130731
          Length = 490

 Score =  501 bits (1291), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/302 (83%), Positives = 266/302 (88%), Gaps = 4/302 (1%)

Query: 1   MLFSRISRNLRGSFNSCRWFLSVGDQNHRFLFSHNVQSHTDSTQQVIRSLIFSKGFPALY 60
           MLFSRISRNLRG+FN  R FLS+G+ N RFLFSH   S  DST+QV+RSL+FSKG PALY
Sbjct: 1   MLFSRISRNLRGAFNGYRRFLSIGENNRRFLFSH---SPADSTEQVMRSLVFSKGMPALY 57

Query: 61  SSRHQIHHQ-SSPIVEDEHDPFSLVADELSILGNKLREMVVAEVPKLASAAEYFFKMGVE 119
           SSR+ IHH  SS +VEDE DPFSLVADELS +GNKLREMVVA+VPKLASAAEYFFKMGVE
Sbjct: 58  SSRYHIHHHTSSSLVEDELDPFSLVADELSFIGNKLREMVVAKVPKLASAAEYFFKMGVE 117

Query: 120 GKRFRPTVLLLMSTALNXXXXXXXXXXXXXXTMTTDLRSRQQRIAEITEMIHVASLLHDD 179
           GKRFRPTVLLLMSTALN              T TTDLRSRQQRIAEITEMIHVASLLHDD
Sbjct: 118 GKRFRPTVLLLMSTALNLPIPKAPPPMELGGTTTTDLRSRQQRIAEITEMIHVASLLHDD 177

Query: 180 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTG 239
           VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLA+VVEHLVTG
Sbjct: 178 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAEVVEHLVTG 237

Query: 240 ETMQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGL 299
           E MQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKA+AILAGQTAEVA+LAFEYGKNL  
Sbjct: 238 EIMQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKAIAILAGQTAEVAVLAFEYGKNLVC 297

Query: 300 AF 301
            F
Sbjct: 298 IF 299



 Score =  208 bits (530), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 110/122 (90%)

Query: 298 GLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPEN 357
           GLAFQLIDDVLDFTGTSASLGKGSLSDI+HGIVTAPILFAMEEFPQLRAIVE+GFENPEN
Sbjct: 369 GLAFQLIDDVLDFTGTSASLGKGSLSDIQHGIVTAPILFAMEEFPQLRAIVEEGFENPEN 428

Query: 358 VDLALEYLGKSRGIQRTKELXXXXXXXXXXXIDSLPESDDEEVRRSRKALIDLTHIVITR 417
           V++AL+YLGKSRGIQ+TKEL           IDSLPE+D+EEVR+SRKAL++LT IVITR
Sbjct: 429 VNIALDYLGKSRGIQKTKELAMKHASLAAEAIDSLPENDNEEVRKSRKALVELTQIVITR 488

Query: 418 TK 419
           TK
Sbjct: 489 TK 490


>Medtr2g072470.1 | solanesyl diphosphate synthase | HC |
           chr2:30511132-30506990 | 20130731
          Length = 421

 Score =  234 bits (597), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 220/393 (55%), Gaps = 34/393 (8%)

Query: 9   NLRGSFNSCRWFLSVGDQN-HRFLFSH--NVQSHTDSTQQVIRSLIFS---KGFPALYSS 62
           N +G  N  R  +    +N H++  S     +   +   Q I+ L      K +PA   S
Sbjct: 39  NSKGCGNGARKLVCCKKRNTHQYRVSSMDTAEPTLNGGTQAIKDLAKGLNLKSYPATPIS 98

Query: 63  RHQIHHQSSPIVEDEHDPFSLVADELSILGNKLREMVVAEVPKLASAAEYFFKMGVEGKR 122
            +++              F +V+D+L  L   L+ +V AE P L SAAE  F  G  GKR
Sbjct: 99  PNRL--------------FEVVSDDLLTLNKNLQSIVGAENPVLISAAEQIFSAG--GKR 142

Query: 123 FRPTVLLLMSTALNXXXXXXXXXXXXXXTMTTDLRSRQQRIAEITEMIHVASLLHDDVLD 182
            RP ++ L+S A                    DL  + +R+AEI EMIH ASL+HDDVLD
Sbjct: 143 MRPALVFLVSRA------------TAELHGLEDLTVKHRRLAEIVEMIHTASLIHDDVLD 190

Query: 183 DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVSLLAKVVEHLVTGETM 242
           ++D RRG  +++ + G ++AVLAGDF+ +++   LA+L+N EV+ L+++V++   +GE  
Sbjct: 191 ESDLRRGKETVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIK 250

Query: 243 QMTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQ 302
           Q ++  D    ++ Y+ K+Y+KTASLI+ S K  A+ +G  + +    FEYGKNLGL+FQ
Sbjct: 251 QASSLFDCDVQLDEYLIKSYFKTASLIAASVKGAAVFSGSDSSMTEKMFEYGKNLGLSFQ 310

Query: 303 LIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLRAIVEDGFENPENVDLAL 362
           ++DD+LDFT ++  LGK + +D+  G +TAP++FA+E+ P+LR I+E  F    ++D A+
Sbjct: 311 VVDDILDFTQSAEQLGKPAGTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAI 370

Query: 363 EYLGKSRGIQRTKELXXXXXXXXXXXIDSLPES 395
           + +    GI+R +EL           +  LP S
Sbjct: 371 KLVKSCGGIERAQELAKEKADLAIQSLQCLPPS 403


>Medtr5g019460.1 | geranylgeranyl pyrophosphate synthase | HC |
           chr5:7341789-7340535 | 20130731
          Length = 371

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 126/267 (47%), Gaps = 32/267 (11%)

Query: 86  DELSILGNKLREMVVAEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMSTALNXXXXXXXX 144
           ++ +I+   L E +V + P K+  A  Y    G  GKR RP VL + +  L         
Sbjct: 86  EKANIVNKALDEAIVLQEPEKIYEAMRYSLLAG--GKRVRP-VLCIAACGLVGGKEEASI 142

Query: 145 XXXXXXTMTTDLRSRQQRIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLA 202
                              A   EMIH  SL+HDD+  +D+ D RRG  + + V G  +A
Sbjct: 143 PS-----------------ACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVA 185

Query: 203 VLAGDFLLSRAC--VALASL-----KNTEVVSLLAKVV--EHLVTGETMQMTTTSDQRCS 253
           VLAGD LLS A   VA++++     +    ++ LAK V  E LV G+ + + +       
Sbjct: 186 VLAGDALLSFAFEHVAVSTIGVPPERIVRAIAELAKAVGKEGLVAGQIVDLESEGKSNVG 245

Query: 254 MEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFEYGKNLGLAFQLIDDVLDFTGT 313
           +E        KTA+L+  +    AI+ G T +      ++ + +GL FQ++DD+LD T +
Sbjct: 246 LETLEFIHLRKTAALLEAAVVMGAIVGGGTEDEIEKLRKFARYIGLLFQVVDDILDVTKS 305

Query: 314 SASLGKGSLSDIRHGIVTAPILFAMEE 340
           S  LGK +  D+     T P L  +E+
Sbjct: 306 SEELGKTAGKDLTADKATYPKLLGLEK 332


>Medtr8g078070.1 | geranylgeranyl pyrophosphate synthase | HC |
           chr8:33275574-33277440 | 20130731
          Length = 372

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 129/288 (44%), Gaps = 36/288 (12%)

Query: 69  QSSPIVEDEHDPF----SLVADELSILGNKLREMVVAEVP-KLASAAEYFFKMGVEGKRF 123
           +  PI  +E +P     S + ++ + +   L + V    P K+  A  Y    G  GKR 
Sbjct: 66  KQEPIEAEEQNPIFNFKSYMIEKATRVNKALDDAVSLREPLKVHEAMRYSLLAG--GKRV 123

Query: 124 RPTVLLLMSTALNXXXXXXXXXXXXXXTMTTDLRSRQQRIAEITEMIHVASLLHDDV--L 181
           RP VL L +  L                            A   EMIH  SL+HDD+  +
Sbjct: 124 RP-VLCLAACEL-----------------VGGTEPMAMPAACAVEMIHTMSLIHDDLPCM 165

Query: 182 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-------CVALASLKNTEVVSLLAKVV- 233
           D+ D RRG  + + V G  +AVLAGD LL+ A        V ++  +    +  LAK + 
Sbjct: 166 DNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTVDVSPARIVRAIGELAKSIG 225

Query: 234 -EHLVTGETMQMTTTSDQRCSMEYYMEKTYYKTASLISNSCKALAILAGQTAEVAMLAFE 292
            E LV G+ + + +       +E       +KTA+L+  +    AIL G + E      +
Sbjct: 226 SEGLVAGQVVDINSEGLSDVGLERLEFIHLHKTAALLEGAVVLGAILGGGSDEDVEKLRK 285

Query: 293 YGKNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEE 340
           +   +GL FQ++DD+LD T +S  LGK +  D+    VT P L  +E+
Sbjct: 286 FATYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 333