Miyakogusa Predicted Gene

Lj0g3v0280899.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280899.2 Non Characterized Hit- tr|C0PLD4|C0PLD4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,37.86,1e-18,coiled-coil,NULL,CUFF.18674.2
         (205 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g037260.2 | transmembrane protein, putative | HC | chr5:16...   296   8e-81
Medtr5g037260.1 | transmembrane protein, putative | HC | chr5:16...   273   8e-74

>Medtr5g037260.2 | transmembrane protein, putative | HC |
           chr5:16273998-16277600 | 20130731
          Length = 330

 Score =  296 bits (759), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 179/216 (82%), Gaps = 11/216 (5%)

Query: 1   MKRTIESKDRMLGVLSEKINSHLLLFDSIAKEVFYIKQTVDKVQNTVNDKEEVVISLKNK 60
           +KR+IE+KDRML VLSEKINSHLLLFDSI KEVFYIK  +DKVQN V DKEEVV SLKNK
Sbjct: 115 LKRSIENKDRMLSVLSEKINSHLLLFDSIEKEVFYIKHILDKVQNIVKDKEEVVTSLKNK 174

Query: 61  MDRVSAFENEFIGHISDQRNRLENNEAALRRKDRVISELEAKLDREKLSNNSQSQIEDLQ 120
           M++VSAFE EF+ HI+D RN+LEN EA  R+KDRVISELEAKLD  K+SNN+Q+QIEDLQ
Sbjct: 175 MNQVSAFEKEFVEHITDLRNKLENKEAESRKKDRVISELEAKLDGAKISNNNQAQIEDLQ 234

Query: 121 KTLSAKDAEIHNLISDKEALHYEVGSLRLILQRIRDTVTNMNEEDKRLFSSILQHKEAS- 179
           KT+ AKDAEIHNLISDKEALH EVGSLRLILQR + T+TNMNEEDK+LFSSILQ KEAS 
Sbjct: 235 KTILAKDAEIHNLISDKEALHNEVGSLRLILQRFQGTITNMNEEDKKLFSSILQPKEASA 294

Query: 180 ----------EMDIKIADNRMEDIVQNNKVETQEPS 205
                     + D+KI D R ED VQNN+ ++QEP+
Sbjct: 295 TDMKIDVYPRKRDMKIEDIRTEDFVQNNEEKSQEPT 330


>Medtr5g037260.1 | transmembrane protein, putative | HC |
           chr5:16273998-16280229 | 20130731
          Length = 452

 Score =  273 bits (698), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 149/215 (69%), Positives = 169/215 (78%), Gaps = 22/215 (10%)

Query: 1   MKRTIESKDRMLGVLSEKINSHLLLFDSIAKEVFYIKQTVDKVQNTVNDKEEVVISLKNK 60
           +KR+IE+KDRML VLSEKINSHLLLFDSI KEVFYIK  +DKVQN V DKEEVV SLKNK
Sbjct: 115 LKRSIENKDRMLSVLSEKINSHLLLFDSIEKEVFYIKHILDKVQNIVKDKEEVVTSLKNK 174

Query: 61  MDRVSAFENEFIGHISDQRNRLENNEAALRRKDRVISELEAKLDREKLSNNSQSQIED-- 118
           M++VSAFE EF+ HI+D RN+LEN EA  R+KDRVISELEAKLD  K+SNN+Q+QIED  
Sbjct: 175 MNQVSAFEKEFVEHITDLRNKLENKEAESRKKDRVISELEAKLDGAKISNNNQAQIEDIS 234

Query: 119 --------------LQKTLSAKDAEIHNLISDKEALHYEVGSLRLILQRIRDTVTNMNEE 164
                         LQKT+ AKDAEIHNLISDKEALH EVGSLRLILQR + T+TNMNEE
Sbjct: 235 IPPRNSYLYQIVCHLQKTILAKDAEIHNLISDKEALHNEVGSLRLILQRFQGTITNMNEE 294

Query: 165 DKRLFSSILQHKEASEMDIKI------ADNRMEDI 193
           DK+LFSSILQ KEAS  D+KI       D ++EDI
Sbjct: 295 DKKLFSSILQPKEASATDMKIDVYPRKRDMKIEDI 329