Miyakogusa Predicted Gene

Lj0g3v0280799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280799.1 Non Characterized Hit- tr|B9SS94|B9SS94_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,58.82,0.00009,no description,NULL,gene.g21825.t1.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g064250.1 | zinc finger CCCH domain protein | LC | chr3:28...    50   3e-07
Medtr3g064300.1 | zinc ion-binding/DNA-binding protein, putative...    50   4e-07
Medtr3g064280.1 | zinc finger CCCH domain protein | LC | chr3:28...    45   1e-05

>Medtr3g064250.1 | zinc finger CCCH domain protein | LC |
          chr3:28895175-28887869 | 20130731
          Length = 795

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 40 MVRTKNKRRKEENIAEDWCFACKDGGLMRVCDYRTRLR 77
          M R  NKR+KEE IAE +CF CKDGG MR+CD+R  L+
Sbjct: 1  MGRKNNKRKKEE-IAESFCFICKDGGDMRICDFRNCLK 37


>Medtr3g064300.1 | zinc ion-binding/DNA-binding protein, putative
          | LC | chr3:28939249-28935080 | 20130731
          Length = 279

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%), Gaps = 1/38 (2%)

Query: 40 MVRTKNKRRKEENIAEDWCFACKDGGLMRVCDYRTRLR 77
          M +  NKRRKEE I+ED+CF CKDGG +RVCD+R  L+
Sbjct: 1  MGKRNNKRRKEE-ISEDYCFFCKDGGELRVCDFRNCLK 37


>Medtr3g064280.1 | zinc finger CCCH domain protein | LC |
          chr3:28928317-28921679 | 20130731
          Length = 787

 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 21/25 (84%)

Query: 53 IAEDWCFACKDGGLMRVCDYRTRLR 77
          IAE+WCF CKDGG +RVCD+R  L+
Sbjct: 13 IAEEWCFVCKDGGELRVCDFRDCLK 37