Miyakogusa Predicted Gene

Lj0g3v0280459.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280459.2 Non Characterized Hit- tr|I1JJI9|I1JJI9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.3517 PE=,27.54,0.000001,
,CUFF.18656.2
         (211 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g095530.1 | import inner membrane translocase subunit TIM5...    59   2e-09

>Medtr5g095530.1 | import inner membrane translocase subunit TIM50 |
           HC | chr5:41756236-41749982 | 20130731
          Length = 374

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 6/207 (2%)

Query: 1   MAVPAKVLEVCINVKRIDESNQTKIWDFILTKPIPESPPLP---FQLALVPVSRLADYIQ 57
           + VPAK +E+ ++ +R  E +     +    K +P+  P     F L L     L  YI 
Sbjct: 148 VTVPAKAVELYLDARRFIEEHVKGYTEPYTDKLLPDLLPQEQHVFTLVLDLNETLIHYIW 207

Query: 58  SAKRRDEFFTRPGIDDLLLCFSTFYESMDEVDSVNLICRTVTLKYFINFFLTFLLLQ--M 115
           +     + F RPG+D  L   + F+E +   D  N+    V  +      + + L +   
Sbjct: 208 TRDTSWQTFKRPGVDAFLEHLAQFFEIVVYTDEQNMFVDPVIERLDPKHCIRYRLSRPAT 267

Query: 116 RYLDENIKCLWSNLKKAKKPFFLLCGPEVQNCLHGESYLLIKKRNLEDNEENALTFTSMD 175
           +Y D       S L +       L G  +++CL  E+ + IK     D ++ AL    + 
Sbjct: 268 KYQDGKHYRDLSKLNRNPAKVMYLSGHALESCLQPENCVPIKPWVQTDKDDTALV-DFIP 326

Query: 176 VLAYVAITCPGSVRLVLRSYNGVLIPS 202
            L +VA T P  +R VL+SY G  IPS
Sbjct: 327 FLEFVARTSPADIRPVLQSYQGCDIPS 353