Miyakogusa Predicted Gene

Lj0g3v0280159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0280159.1 tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max
PE=4 SV=1,71.14,0,RT_POL,Reverse transcriptase; RETROVIRUS
POLYPROTEIN,NULL; GAG/POL/ENV POLYPROTEIN,NULL; DNA/RNA
pol,CUFF.18644.1
         (447 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g052140.1 | DNA/RNA polymerase superfamily protein, putati...   122   7e-28
Medtr6g045307.1 | IPP transferase | LC | chr6:16235075-16228160 ...   107   3e-23
Medtr0003s0410.1 | PIF1-like helicase | LC | scaffold0003:201823...    90   4e-18
Medtr8g068990.1 | ankyrin repeat protein | LC | chr8:28865041-28...    75   1e-13
Medtr3g435980.1 | reverse-transcriptase-like protein, putative |...    75   2e-13
Medtr2g071820.1 | LRR and NB-ARC domain disease resistance prote...    72   1e-12
Medtr0030s0330.1 | hypothetical protein | LC | scaffold0030:1010...    67   3e-11
Medtr0771s0010.1 | Ty3/Gypsy polyprotein/retrotransposon, putati...    55   1e-07
Medtr7g096050.1 | DNA/RNA polymerase superfamily protein, putati...    53   7e-07

>Medtr1g052140.1 | DNA/RNA polymerase superfamily protein, putative
           | LC | chr1:21026576-21020690 | 20130731
          Length = 710

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 84/126 (66%), Gaps = 1/126 (0%)

Query: 320 DHLLHLESVLQTLQHHVLFARLSKCSFGLLEVEYLGHMVSGTGVAMETSKIQAILEWPQP 379
           +H  HL+ VLQ L+   L+A++SKC F L EV + GH++SG G+ ++ SK++A+ +W  P
Sbjct: 7   EHAEHLKIVLQVLKEKKLYAKISKCEFWLKEVSFFGHVISGDGIVVDPSKVKAVSQWETP 66

Query: 380 VSIKQLRGFLGLTGYYRQFIQSYAMIAGPLTDL-LKKDSFCWTEAAHQAFIKLKHVITSA 438
            S+ ++R FLGL GYYR+FI+ ++ +A PLT L  K  +F W       F +LK  +T+A
Sbjct: 67  KSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTCKGKAFVWDVQCENNFSELKKQLTTA 126

Query: 439 PVLALP 444
           PVL LP
Sbjct: 127 PVLILP 132


>Medtr6g045307.1 | IPP transferase | LC | chr6:16235075-16228160 |
           20130731
          Length = 1039

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 79/116 (68%), Gaps = 1/116 (0%)

Query: 331 TLQHHVLFARLSKCSFGLLEVEYLGHMVSGTGVAMETSKIQAILEWPQPVSIKQLRGFLG 390
           +L+ + L A+LSKC F L E  +LGH++S  G++++  K+ A+L+W  P S+ ++R F+G
Sbjct: 59  SLKENQLCAKLSKCEFWLKEGSFLGHVISKGGISVDPPKVDAVLQWESPKSVFEIRSFIG 118

Query: 391 LTGYYRQFIQSYAMIAGPLTDLLKK-DSFCWTEAAHQAFIKLKHVITSAPVLALPN 445
           L GYYR+FI+ ++ +A PLT L +K  ++ W     ++F +LK  +TSA VL LPN
Sbjct: 119 LAGYYRRFIEGFSKLALPLTQLTRKGQAYVWDAKCEKSFQELKKRLTSALVLILPN 174


>Medtr0003s0410.1 | PIF1-like helicase | LC |
           scaffold0003:201823-194672 | 20130731
          Length = 795

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 3/96 (3%)

Query: 350 EVEYLGHMVSGTGVAMETSKIQAILEWPQPVSIKQLRGFLGLTGYYRQFIQSYAMIAGPL 409
           EV +LGH++SG+G+  + SK+ A+ +W  P S+ ++R FLGL GYYR+FI+ ++ +A PL
Sbjct: 613 EVSFLGHIISGSGI--DPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPL 670

Query: 410 TDL-LKKDSFCWTEAAHQAFIKLKHVITSAPVLALP 444
           T L  K  SF W      +F +LK  +T+A +L LP
Sbjct: 671 TQLTCKGKSFVWDAQCESSFSELKRRLTTASILILP 706


>Medtr8g068990.1 | ankyrin repeat protein | LC |
           chr8:28865041-28867783 | 20130731
          Length = 457

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 51/76 (67%)

Query: 328 VLQTLQHHVLFARLSKCSFGLLEVEYLGHMVSGTGVAMETSKIQAILEWPQPVSIKQLRG 387
           VL  L    L+A+ +KC F L EV++L H++S  G  +E SK++AIL W +P ++ ++R 
Sbjct: 377 VLSVLIEQQLYAKFNKCEFLLSEVKFLRHVISQGGGVVEPSKVEAILNWGRPKNVAEVRS 436

Query: 388 FLGLTGYYRQFIQSYA 403
           FL L GYYR+FI  ++
Sbjct: 437 FLELLGYYRRFIMKFS 452


>Medtr3g435980.1 | reverse-transcriptase-like protein, putative | LC
           | chr3:11888352-11891487 | 20130731
          Length = 326

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 50/69 (72%)

Query: 166 SQKEQIEKMVQDMLSQGIIQPSTSPFSSPIVLVKKKDGRWRFCTDYRALNAITIKDSFPM 225
           S+  +++K ++D+L +  ++PS SP+  PI+LVKKKDG  R C DYR L  +TI + +P+
Sbjct: 4   SELSELKKQLEDLLDKKFVRPSVSPWGVPILLVKKKDGSMRLCIDYRQLIKVTINNRYPL 63

Query: 226 PTVDELLDE 234
           P +D+L+D+
Sbjct: 64  PRIDDLMDQ 72


>Medtr2g071820.1 | LRR and NB-ARC domain disease resistance protein
           | LC | chr2:30006225-30010652 | 20130731
          Length = 507

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 48/74 (64%)

Query: 137 LPPHRTQNHTIPLLPDAKPVKVRPYRYPHSQKEQIEKMVQDMLSQGIIQPSTSPFSSPIV 196
           +PP R    +I L+P  KP+ + PY    S+  +++K ++D+L +  ++PS SP+ +P++
Sbjct: 433 VPPEREVEFSIDLIPGTKPISMAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAPVL 492

Query: 197 LVKKKDGRWRFCTD 210
           LVKKKDG  R C D
Sbjct: 493 LVKKKDGSMRLCID 506


>Medtr0030s0330.1 | hypothetical protein | LC |
           scaffold0030:101070-104182 | 20130731
          Length = 442

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 41/150 (27%)

Query: 136 GLPPHRTQNHTIPLLPDAKPVKVRPYRYPHSQKEQIEKMVQDMLSQGIIQPSTSPFSSPI 195
           G+ P+R  +  I L     P+ +  YR   +   +++  +QD +                
Sbjct: 268 GMIPYRDIDFCIDLESGTYPIFITSYRMAPAMLTKLKAQIQDSMI--------------- 312

Query: 196 VLVKKKDGRWRFCTDYRALNAITIKDSFPMPTVDELLDELFGAKYFSKLDLRSGYHQILV 255
                       C DYR LN +T ++ + +P +D+L ++L+  K               +
Sbjct: 313 -----------MCKDYRQLNRVTTRNKYTLPLIDDLFNQLWRLK---------------I 346

Query: 256 QQDDRYKTAFRTHHGHYEWLVMPFGLTNAP 285
           + +D  K   RTH+GHYE+LV+ FGLTNAP
Sbjct: 347 RHEDVPKKVSRTHYGHYEFLVISFGLTNAP 376


>Medtr0771s0010.1 | Ty3/Gypsy polyprotein/retrotransposon, putative
           | LC | scaffold0771:4754-4338 | 20130731
          Length = 138

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 322 LLHLESVLQTLQHHVLFARLSKCSFGLLEVEYLGHMVSGTGVAMETSKIQAILEWPQPVS 381
           L H   VL TL+   LFA+ SKC F L +V +L H++S +G+ ++ SK+ A+L W    S
Sbjct: 70  LEHPTVVLHTLKEKKLFAKSSKCEFWLQKVSFLNHVISKSGIVVDPSKVDAMLRWETQKS 129

Query: 382 I 382
           I
Sbjct: 130 I 130


>Medtr7g096050.1 | DNA/RNA polymerase superfamily protein, putative
           | HC | chr7:38510513-38510776 | 20130731
          Length = 87

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 328 VLQTLQHHVLFARLSKCSFGLLEVE--YLGHMVSGTGVAMETSKIQAILEWPQPVSIKQL 385
           + Q L +H     + K +F  +  E   LGH +S  G+ ++ +KI  I +   P +IK +
Sbjct: 2   ISQILGNHFTSTYIIKSNFHFIVKEDIVLGHRISKEGLEVDKAKIDVIEKLRPPTNIKGV 61

Query: 386 RGFLGLTGYYRQFIQSYAMIAGPL 409
           R FLG  G+YR+FI+ ++ I+  L
Sbjct: 62  RSFLGRAGFYRKFIKDFSQISKSL 85