Miyakogusa Predicted Gene

Lj0g3v0279729.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279729.1 NODE_38046_length_109_cov_221.605499.path2.1
         (50 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g076100.1 | gamma-aminobutyrate transaminase | HC | chr4:2...    50   6e-07
Medtr4g076100.2 | gamma-aminobutyrate transaminase | HC | chr4:2...    50   7e-07

>Medtr4g076100.1 | gamma-aminobutyrate transaminase | HC |
           chr4:29115711-29104308 | 20130731
          Length = 513

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 2   IADEIQSGLGRAGKMLACDWEDVRPDVVILAKALGGGILPVSAVLADKD 50
           IADE+    GR G M  CD  +++PD+V LAKAL    +P+ A+L   +
Sbjct: 307 IADEVICAFGRLGYMFGCDKYNIKPDLVSLAKALSSAYMPIGAILVSPE 355


>Medtr4g076100.2 | gamma-aminobutyrate transaminase | HC |
           chr4:29109944-29104308 | 20130731
          Length = 369

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 2   IADEIQSGLGRAGKMLACDWEDVRPDVVILAKALGGGILPVSAVLADKD 50
           IADE+    GR G M  CD  +++PD+V LAKAL    +P+ A+L   +
Sbjct: 163 IADEVICAFGRLGYMFGCDKYNIKPDLVSLAKALSSAYMPIGAILVSPE 211