Miyakogusa Predicted Gene

Lj0g3v0279609.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279609.2 Non Characterized Hit- tr|I1NIU3|I1NIU3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.5211
PE=,84.45,0,XRN_N,Putative 5-3 exonuclease; zf-CCHC,Zinc finger,
CCHC-type; no description,Zinc finger, CCHC-typ,CUFF.18603.2
         (681 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114570.1 | 5'-3' exoribonuclease | HC | chr7:47305879-473...  1030   0.0  
Medtr7g114570.2 | 5'-3' exoribonuclease | HC | chr7:47305880-473...  1030   0.0  
Medtr4g051920.1 | 5'-3' exoribonuclease | HC | chr4:18782027-187...   480   e-135

>Medtr7g114570.1 | 5'-3' exoribonuclease | HC |
           chr7:47305879-47315956 | 20130731
          Length = 956

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/691 (73%), Positives = 565/691 (81%), Gaps = 12/691 (1%)

Query: 1   MGVP--------RSPLSISDVLEDEPA-VVGDGVHLPIDLTKPNPNGMEFDNLYLDMNGI 51
           MGVP        R P SI DV+E+ P+  V  G   P+D+++PNPNGMEFDNLYLDMNGI
Sbjct: 1   MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 52  VHPCFHPDGKPAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSXX 111
           +HPCFHPDGKPAPATYDDVFKS+FDY+DHLFSLVRPRKLLYLAIDGVAPRAKMNQQRS  
Sbjct: 61  IHPCFHPDGKPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRR 120

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXNLLSPKEKTETSDSNVITPGTQFMAALSVALQYYV 171
                                     LL+ KEKTET DSNVITPGT FMA LSVALQYY+
Sbjct: 121 FRAAKDAAEAEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYI 180

Query: 172 QSRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 231
           Q+RLN+NPGW+  KV+L+DSN PGEGEHKIM+YIRLQRNLPGF+PNTRHCLYGLDADLIM
Sbjct: 181 QTRLNYNPGWRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIM 240

Query: 232 LSLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAADCRGKPDTKTEDWNRADDIPIHK 291
           LSLATHE+HFSILREVIT PGQQ+KC+ CGQVGH AA+CRGKP     DW   DD PIHK
Sbjct: 241 LSLATHEIHFSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNALDWP-VDDTPIHK 299

Query: 292 KKYQFLNIWVLREYLQYELEIPNPPFEIDFERXXXXXXXXXXXXGNDFLPHMPTLEIREG 351
           KKYQFL+IWVLREYLQYEL IP+PPFEIDFER            GNDFLPHMPTLEIREG
Sbjct: 300 KKYQFLHIWVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359

Query: 352 AINLLMHIYRKEFTAVGGYLTHAGEVCLDRLEHFIQSVAVHEDQIFQKRVRVQQVMENNQ 411
           A+NLLMHIYRKEFTA+GGYLT AGEV L+R+E+FIQ VAVHE+QIFQKRVR+QQ  E N+
Sbjct: 360 AVNLLMHIYRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQEFNE 419

Query: 412 EMRARARGVMPEEPRASLVDKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEG 471
            MRARARG MPEEPRAS+VDKVKLG PGY +RYY EKFG +S  EI++IKKDIVLKYVEG
Sbjct: 420 GMRARARGEMPEEPRASVVDKVKLGQPGYTERYYAEKFG-ASDPEIERIKKDIVLKYVEG 478

Query: 472 LCWVCQYYYNGVSSWKWYYPYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQLMGVLPALS 531
           LCWVC+YYY GV SW+WYYPYHYAPFASDLKDL DLEI FF GEPF+PFDQLMG LP+ S
Sbjct: 479 LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSS 538

Query: 532 SNALPKKYRDLMTD-SSPILHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIE 590
           S+ALP++YRDLM + SSPIL FYP+DFEIDMNGK+++WQGVAKLPFIDEKKLL+ATR +E
Sbjct: 539 SSALPERYRDLMINPSSPILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLE 598

Query: 591 DTLTEEEQLRNSVMLDLLYVNRAHDLAPHILLYCKAYSQSPSHERCVSPIATNASGGMNG 650
            TLTEEEQLRNS MLDLLYV+RAH L PHIL Y + YS  P  +R V PI  +AS GMNG
Sbjct: 599 GTLTEEEQLRNSKMLDLLYVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNG 658

Query: 651 YLWLCERNVFSSIVSSPINGLQDLESNQVLN 681
           +LW  ERNVF ++VSSPI GLQD+  NQVLN
Sbjct: 659 FLWSYERNVFRTVVSSPIKGLQDIACNQVLN 689


>Medtr7g114570.2 | 5'-3' exoribonuclease | HC |
           chr7:47305880-47315956 | 20130731
          Length = 945

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/691 (72%), Positives = 565/691 (81%), Gaps = 12/691 (1%)

Query: 1   MGVP--------RSPLSISDVLEDEPA-VVGDGVHLPIDLTKPNPNGMEFDNLYLDMNGI 51
           MGVP        R P SI DV+E+ P+  V  G   P+D+++PNPNGMEFDNLYLDMNGI
Sbjct: 1   MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 52  VHPCFHPDGKPAPATYDDVFKSIFDYVDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSXX 111
           +HPCFHPDGKPAPATYDDVFKS+FDY+DHLFSLVRPRKLLYLAIDGVAPRAKMNQQRS  
Sbjct: 61  IHPCFHPDGKPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRR 120

Query: 112 XXXXXXXXXXXXXXXXXXXXXXXXXNLLSPKEKTETSDSNVITPGTQFMAALSVALQYYV 171
                                     LL+ KEKTET DSNVITPGT FMA LSVALQYY+
Sbjct: 121 FRAAKDAAEAEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYI 180

Query: 172 QSRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 231
           Q+RLN+NPGW+  KV+L+DSN PGEGEHKIM+YIRLQRNLPGF+PNTRHCLYGLDADLIM
Sbjct: 181 QTRLNYNPGWRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIM 240

Query: 232 LSLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAADCRGKPDTKTEDWNRADDIPIHK 291
           LSLATHE+HFSILREVIT PGQQ+KC+ CGQVGH AA+CRGKP     DW   DD PIHK
Sbjct: 241 LSLATHEIHFSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNALDWP-VDDTPIHK 299

Query: 292 KKYQFLNIWVLREYLQYELEIPNPPFEIDFERXXXXXXXXXXXXGNDFLPHMPTLEIREG 351
           KKYQFL+IWVLREYLQYEL IP+PPFEIDFER            GNDFLPHMPTLEIREG
Sbjct: 300 KKYQFLHIWVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359

Query: 352 AINLLMHIYRKEFTAVGGYLTHAGEVCLDRLEHFIQSVAVHEDQIFQKRVRVQQVMENNQ 411
           A+NLLMHIYRKEFTA+GGYLT AGEV L+R+E+FIQ VAVHE+QIFQKRVR+QQ  E N+
Sbjct: 360 AVNLLMHIYRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQEFNE 419

Query: 412 EMRARARGVMPEEPRASLVDKVKLGDPGYKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEG 471
            MRARARG MPEEPRAS+VDKVKLG PGY +RYY EKFG +S  EI++IKKDIVLKYVEG
Sbjct: 420 GMRARARGEMPEEPRASVVDKVKLGQPGYTERYYAEKFG-ASDPEIERIKKDIVLKYVEG 478

Query: 472 LCWVCQYYYNGVSSWKWYYPYHYAPFASDLKDLPDLEIHFFRGEPFKPFDQLMGVLPALS 531
           LCWVC+YYY GV SW+WYYPYHYAPFASDLKDL DLEI FF GEPF+PFDQLMG LP+ S
Sbjct: 479 LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSS 538

Query: 532 SNALPKKYRDLMTD-SSPILHFYPADFEIDMNGKRFAWQGVAKLPFIDEKKLLAATRKIE 590
           S+ALP++YRDLM + SSPIL FYP+DFEIDMNGK+++WQGVAKLPFIDEKKLL+ATR +E
Sbjct: 539 SSALPERYRDLMINPSSPILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLE 598

Query: 591 DTLTEEEQLRNSVMLDLLYVNRAHDLAPHILLYCKAYSQSPSHERCVSPIATNASGGMNG 650
            TLTEEEQLRNS MLDLLYV+RAH L PHIL Y + YS  P  +R V PI  +AS GMNG
Sbjct: 599 GTLTEEEQLRNSKMLDLLYVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNG 658

Query: 651 YLWLCERNVFSSIVSSPINGLQDLESNQVLN 681
           +LW  ERNVF ++VSSPI GLQD+  NQVL+
Sbjct: 659 FLWSYERNVFRTVVSSPIKGLQDIACNQVLH 689


>Medtr4g051920.1 | 5'-3' exoribonuclease | HC |
           chr4:18782027-18788114 | 20130731
          Length = 846

 Score =  480 bits (1236), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/723 (39%), Positives = 384/723 (53%), Gaps = 140/723 (19%)

Query: 35  NPNGMEFDNLYLDMNGIVHPCFHPD------GKPAPATYDDVFKSIFDYVDHLFSLVRPR 88
           N   +E+DNLYLDMN I+HPCFHP+      G P P T+ +VF ++F+Y+D L ++ +PR
Sbjct: 26  NTTNVEYDNLYLDMNSIIHPCFHPNDDDNNNGTP-PTTFVEVFANMFEYIDRLVTIAKPR 84

Query: 89  KLLYLAIDGVAPRAKMNQQRSXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLSPKEKTETS 148
           KLLY+AIDGVAPRAKMNQQR+                             + PK++ E S
Sbjct: 85  KLLYMAIDGVAPRAKMNQQRTRRFRNVKDDEMREVEEERLRKEFEMEGKQVLPKQECEVS 144

Query: 149 DSNVITPGTQFMAALSVALQYYVQSRLNHNPGWQKIKVILTDSNAPGEGEHKIMEYIRLQ 208
           DSN+ITPGT FM  +S AL+ Y+ S+++ +P W+ I VIL+D+N PGEGEHK+M +IR Q
Sbjct: 145 DSNIITPGTDFMHQISNALKSYISSKISSDPLWKGIMVILSDANVPGEGEHKVMSFIRKQ 204

Query: 209 RNLPGFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVITLPGQQDKCFSCGQVGHFAA 268
           R LP ++PNT HCLYG DADLIML L+ HE HFSILRE+                     
Sbjct: 205 RGLPDYDPNTVHCLYGSDADLIMLGLSCHEPHFSILREL--------------------- 243

Query: 269 DCRGKPDTKTEDWNRADDIPIHKKKYQFLNIWVLREYLQYELEIPNPP--FEIDFERXXX 326
                                       L+IW+LREYL+ E++I +PP  F  D ER   
Sbjct: 244 ----------------------------LHIWLLREYLEIEMKIEDPPKNFVFDLERIVD 275

Query: 327 XXXXXXXXXGNDFLPHMPTLEIREGAINLLMHIYRKEFTAVGGYLT--------HAGEVC 378
                    GNDFLPH+P+L I E AI+LLM +Y+KEF+ +GGYL         H   V 
Sbjct: 276 DFIFICFFSGNDFLPHLPSLYIHEDAIDLLMTVYKKEFSKIGGYLVDINKIGEKHGAYVK 335

Query: 379 LDRLEHFIQSVAVHEDQIFQKRV-----RVQQVMENNQEMRAR----------------- 416
           L R+E F+  V  +E++IF KR      ++++++ +N+  +                   
Sbjct: 336 LSRVEKFVLMVGTYEEKIFSKRTAIRDKKLRRLISDNENSKQEELNSHDCMDFDNENSSN 395

Query: 417 ----------ARGVMP--------------EEPRASLVDKVKLGDPG------------- 439
                     +  V P              E+ +  + DK  L   G             
Sbjct: 396 CALRIKKAEASDNVCPQSDEEILKNTKDLKEKLKKCIKDKGDLFKSGDFLTDKIKLGNVG 455

Query: 440 YKDRYYVEKFGVSSQKEIDKIKKDIVLKYVEGLCWVCQYYYNGVSSWKWYYPYHYAPFAS 499
           +K+RYY EKF V     I+  +K+IV KY EGL WV QYY++GV+SW W+YPYHY PF S
Sbjct: 456 FKERYYKEKFSVEGSTNIELKRKEIVQKYTEGLLWVLQYYFSGVASWTWFYPYHYGPFVS 515

Query: 500 DLKDLPDLEIHFFRGEPFKPFDQLMGVLPALSSNALPKKYRDLMTD-SSPILHFYPADFE 558
           DLK +  + ++F +G PF PFDQL+ VLP  S+ ALPK Y  LM D  S I   Y  DFE
Sbjct: 516 DLKGMAQVRVNFEKGVPFLPFDQLLSVLPQKSAYALPKAYAQLMLDEQSKIFDLYSQDFE 575

Query: 559 IDMNGKRFAWQGVAKLPFIDEKKLLAATRKIEDTLTEEEQLRNSVMLDLLYVNRAHDLAP 618
           ID+ GKRF WQGV KLP++DEK+LL  TR++++ L+E E  RNSV +D L V+    LA 
Sbjct: 576 IDIEGKRFMWQGVCKLPYMDEKRLLTETRELKNELSESEAKRNSVEVDRLLVSGTTKLAE 635

Query: 619 HILLYCKAYSQSPSHERCVSPIATNASGGMNGYLWLCERN------VFSSIVSSPINGLQ 672
            I         S    +  + I+++  GG+      C  N      VF      P+ G  
Sbjct: 636 KIC--------SLKLNKLDTSISSDGIGGIISLCHECVENNKHEDIVFCVKYEHPVGGTS 687

Query: 673 DLE 675
            ++
Sbjct: 688 HVQ 690