Miyakogusa Predicted Gene

Lj0g3v0278469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0278469.1 Non Characterized Hit- tr|I1LPC8|I1LPC8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,75.61,1e-17,coiled-coil,NULL,CUFF.18512.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g076590.1 | hypothetical protein | HC | chr4:29293200-2929...    86   7e-18
Medtr2g102090.1 | NADH-ubiquinone/plastoquinone (complex I) prot...    79   7e-16

>Medtr4g076590.1 | hypothetical protein | HC |
          chr4:29293200-29292097 | 20130731
          Length = 92

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 2/82 (2%)

Query: 1  MEGGSSNSTNLGPKTSELEALQKESEEKHFKIQELKRQIELTKQNLEKKKKEVTEEQRAS 60
          M+  SSN+T +GPK SELE LQKE +EK  KIQELK+QIE TK  LE K+K+   ++  S
Sbjct: 8  MDENSSNNTAIGPKLSELEGLQKEHDEKSSKIQELKKQIESTKHRLENKEKKG--DKMGS 65

Query: 61 FKALSEKYNSLREEYNAMQAAK 82
          F ALS+KY SLREEYNAM A K
Sbjct: 66 FNALSKKYISLREEYNAMLAEK 87


>Medtr2g102090.1 | NADH-ubiquinone/plastoquinone (complex I) protein
           | HC | chr2:43929525-43932697 | 20130731
          Length = 255

 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 53/70 (75%), Gaps = 2/70 (2%)

Query: 13  PKTSELEALQKESEEKHFKIQELKRQIELTKQNLEKKKKEVTEEQRASFKALSEKYNSLR 72
           PK SEL+ LQKE +EK  +I ELKRQIE TKQ LE  KKE T ++  SF ALSEKYNS+R
Sbjct: 36  PKLSELKMLQKEHDEKLSRIAELKRQIESTKQRLE--KKEGTRDKMGSFNALSEKYNSVR 93

Query: 73  EEYNAMQAAK 82
           EEYNA+ A K
Sbjct: 94  EEYNAILAEK 103