Miyakogusa Predicted Gene

Lj0g3v0277959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277959.1 tr|G7JPK5|G7JPK5_MEDTR Nucleoporin NUP188-like
protein OS=Medicago truncatula GN=MTR_4g075330 PE=4
S,73.45,0,seg,NULL,CUFF.18470.1
         (1343 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g075330.1 | hypothetical protein | HC | chr4:28777193-2875...  2026   0.0  

>Medtr4g075330.1 | hypothetical protein | HC | chr4:28777193-28758743
            | 20130731
          Length = 1961

 Score = 2026 bits (5249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1029/1369 (75%), Positives = 1126/1369 (82%), Gaps = 33/1369 (2%)

Query: 1    MMNIRNSLQFHAIDLVNEQDKKNVWIVEIICNLVKNLPLNSYGAALMSMSVKILWIMMTC 60
            M ++ NS+QFHAI L NE+ +KNVW+VE+ICNLVKN PLNSYGAALMSM +KIL IM+ C
Sbjct: 594  MTDLSNSMQFHAIGLPNERVEKNVWVVEMICNLVKNPPLNSYGAALMSMGLKILGIMLIC 653

Query: 61   CPSSVSAATLNANLFDITLQTSVFSAGTSNFS--------RLARMLLIDCEQNSNDFPLA 112
             PS+V+A TLNANLFDITLQT+VFS  ++  S        RLARMLLIDCEQNSND+PLA
Sbjct: 654  SPSNVTAVTLNANLFDITLQTTVFSVSSNGLSSGSWMLSGRLARMLLIDCEQNSNDYPLA 713

Query: 113  ISVLDFTIQLVETGIENDALLALIIFSFQYVLVNHEYWKYKVKHIRWKITLKVLELVKKC 172
            ISVL+FTIQLVETG+END LLALIIFSFQYVLVNHE WKY++KHIRWKITLKVLEL+KKC
Sbjct: 714  ISVLEFTIQLVETGVENDVLLALIIFSFQYVLVNHENWKYRIKHIRWKITLKVLELMKKC 773

Query: 173  IISRPYNGKLGEIVHNVLFCDSSIHNMLFQTACTTAHALEKLHISRLFDPLEIEGLQLAI 232
            IIS PY GKLGEI+HNVLF DSSIHNMLF  ACTTAHALEKLH SR FDP+EIEGLQLAI
Sbjct: 774  IISMPYCGKLGEIIHNVLFSDSSIHNMLFHIACTTAHALEKLHASRFFDPMEIEGLQLAI 833

Query: 233  GSVLDILSVMLTNLSKDTLSSIPVFLQAVFSCATKPVPLITSVISLISYFRDPAIQFGAV 292
            GSV DILS M T LSKDT SSIPVFLQAVFSC TKPV ++TS ISLISYF+DP IQ GAV
Sbjct: 834  GSVFDILSEMTTKLSKDTSSSIPVFLQAVFSCTTKPVSVVTSAISLISYFQDPVIQLGAV 893

Query: 293  RFISTLFAITDCVQPLSYGTSFFAPDNQEIIYLRHSVSCILLEQPESNEDLFVATVNLLT 352
            RFISTLF  TDCVQ  S  T++FAPDNQEII LRHS+S IL E+ E NEDL VATVNLLT
Sbjct: 894  RFISTLFTTTDCVQSFSCETTYFAPDNQEIINLRHSMSYILKEKSELNEDLLVATVNLLT 953

Query: 353  SAAYYQPSFIVAIMALEENSEDHSNTSDARLQKNETFVVPLVSKISSLVDALMHYIERAD 412
            SAA+YQPSFIVAI+A  EN+ED S  SDA LQ+ ET VVP VSK S LVDAL++YIERAD
Sbjct: 954  SAAHYQPSFIVAILAPGENNEDRSCISDANLQRKETSVVPPVSKGSVLVDALINYIERAD 1013

Query: 413  DLINSKPCILLCILNFMFALWQGASQYANFLEFLRTREKLWEHLANAILNSASCETPLLE 472
            DLI SKP ILLC+LN M ALWQGA+QYAN LE LR+R   W+HLANAI N+AS ETPLLE
Sbjct: 1014 DLIKSKPRILLCVLNLMTALWQGATQYANLLESLRSRVNFWKHLANAITNTASSETPLLE 1073

Query: 473  SLKEKDALNLAYTFRCQSAILGIMAYELFFQKKLLHAESLVKNTAESKDKEQNATKTQKS 532
            SLKEKDALNLAY+FRCQSAILGIMAYELF QKKLLHAESLVKN+AESKDKEQNAT+T+KS
Sbjct: 1074 SLKEKDALNLAYSFRCQSAILGIMAYELFLQKKLLHAESLVKNSAESKDKEQNATRTEKS 1133

Query: 533  KATDVPDLKRIWSSWFKEAFLEKLIKSYM-CEFNSDIYHGAKVATTLFSVHVMVKXXXXX 591
            K+ D+ DLK +WSSWFK++ LEKLIK Y  C   SD+Y  AKVAT+LF VHVM+K     
Sbjct: 1134 KSADLHDLKGVWSSWFKDSVLEKLIKLYTSCGHKSDVYDSAKVATSLFCVHVMLKLAVND 1193

Query: 592  XXXXXXXXXQKIHGILTKLSIQPAFSELLSQYSQRGYSEGKELKKLILNDLYYHLQGELE 651
                     QKI GI TKL+I PAFSELLSQYSQRGYSEGKELKKLILNDLYYHLQGELE
Sbjct: 1194 SGSLSVSLLQKIRGIFTKLTIHPAFSELLSQYSQRGYSEGKELKKLILNDLYYHLQGELE 1253

Query: 652  GRKIGIGPFKELSQYLLESNFLGTYQRQFNEDFFAKNVYLFDLVQLRADLRLNMWDCSDW 711
            GRK+GIGPFKELSQYL+ES+FL +YQ QFNEDFFAKN+YLFDL QLRADL L  WDCSDW
Sbjct: 1254 GRKMGIGPFKELSQYLVESSFLASYQHQFNEDFFAKNMYLFDLKQLRADLNLGAWDCSDW 1313

Query: 712  RTSKEIAETMLRFLQDANSVMLFSSSKLSALKGLTAVLAVYHDDSLGMAATRERMPDELM 771
            RTSK+IAETMLRF+QDAN+VML SSSKLSALK L AVLAVYHDDS G A T ER+P+EL+
Sbjct: 1314 RTSKDIAETMLRFVQDANAVMLLSSSKLSALKELIAVLAVYHDDSKGRATTGERIPNELI 1373

Query: 772  VTCIDITCQSFLATIETLSSVARVWEXX----------------------XXXXXXXXXK 809
             TCID  CQSFL TI  LS V    E                                 K
Sbjct: 1374 FTCIDNICQSFLDTIVRLSPVLDASEDMLNILACQVELLLLFTRTVSNGLSIDTSLLVMK 1433

Query: 810  CATSGLKILSELKLVPSEANLIMKQXXXXXXXXXQSNSFSSHSGGATNESSSEDFSTVSN 869
            CA+SGLK+LSE KL+PS+ANLIMK          QSNS + H   A +E S  DFS VSN
Sbjct: 1434 CASSGLKLLSEFKLLPSKANLIMKLLLTLLLLVLQSNSLNLHFNAAADEGSGNDFSRVSN 1493

Query: 870  ATLGLLPILCRCIATSEHCMLSLSVMDVILRVFLVPRTWLPVLQNHLQLQFVMLKLQDKK 929
            ATLGLLPILC CIATSE CML+LSVMD+IL  FL+PRTWLP+LQNHL +QFVMLKLQDK 
Sbjct: 1494 ATLGLLPILCNCIATSELCMLTLSVMDLILGSFLMPRTWLPILQNHLHMQFVMLKLQDKN 1553

Query: 930  SAA-PTIMKFFLTLARVREGADMLYCSGFLSSLRVLFAESDEAFLRIGSENPGSSSEKFE 988
            S++ P IMK FLT+AR R GA+MLYCSGFLSSLRVLFA+S EAF RIGS N  S+ EK E
Sbjct: 1554 SSSIPIIMKLFLTIARTRGGAEMLYCSGFLSSLRVLFAQSGEAFSRIGSPNLNSACEKLE 1613

Query: 989  TLQDIWGLGLAVVTAMVQSLGDSSSGTAIVDSMMPYFFSEKAHLIFDSLNAPDFPSDDHD 1048
              QDIWGLGLAVVTAMVQSLGDSSSGTAIV+SMMPYFFSEKAHLIF+SL+APDFPS+DHD
Sbjct: 1614 IPQDIWGLGLAVVTAMVQSLGDSSSGTAIVESMMPYFFSEKAHLIFNSLDAPDFPSEDHD 1673

Query: 1049 KKRPRAQRSCISFGNLKETEHTLMLMCELAKHWNSWNKAIKNVDRQLREKCIHLLAFFSR 1108
            KKRPRAQR  +SF NLKETEHTL LMCELAKHWNSW KAIKNVD QLREKCIHLLAF SR
Sbjct: 1674 KKRPRAQRPWVSFANLKETEHTLTLMCELAKHWNSWIKAIKNVDTQLREKCIHLLAFISR 1733

Query: 1109 GTQRLSESSSRNAPLLCPPTVKGDFEIALKPSYINSRNGWFALSPLGCVPKQKTPPFSTA 1168
            GTQRL +SS RN PLLCPPT+K DFEI  KPS INSRNGWFALSP GCVPK K   FSTA
Sbjct: 1734 GTQRLGDSSIRNPPLLCPPTLKEDFEIWSKPSCINSRNGWFALSPPGCVPKPKISSFSTA 1793

Query: 1169 LSIYDGQAAGSTDAVPKTCFSDTVAVQVYRITYLLLQFLCLQAEGASKRAEEVGFVDLAH 1228
            LSIY GQA  +T  V KTCFSDTVAVQVYRIT+LLL+FLCLQAEGA+KRAEEVGF+DLAH
Sbjct: 1794 LSIY-GQADETTGPVSKTCFSDTVAVQVYRITFLLLKFLCLQAEGAAKRAEEVGFIDLAH 1852

Query: 1229 FPELPMPEILHGLQDQASVIVAELCQANKLRESPETQNVCKLLLQILEMALYLELCVLQI 1288
            FPELPMPEILHGLQDQA  I+AELCQANKL +S E +NVC LL QILEMAL LELCVLQI
Sbjct: 1853 FPELPMPEILHGLQDQAIAIIAELCQANKLTDSLEIKNVCNLLSQILEMALQLELCVLQI 1912

Query: 1289 CGIRPVLGRVEDFSKGARSLFSALEGHAFLKAYRKSLKQMISCIYPGLL 1337
            CGIRPVLGRVEDFSK A+SLFSALEGHAFLKA   SLKQMIS IYPGLL
Sbjct: 1913 CGIRPVLGRVEDFSKEAKSLFSALEGHAFLKASSNSLKQMISYIYPGLL 1961