Miyakogusa Predicted Gene
- Lj0g3v0277869.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0277869.2 Non Characterized Hit- tr|I1LXA9|I1LXA9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,80.21,0,EXONUCLEASE
FAMILY PROTEIN,NULL; EXONUCLEASE,NULL; no description,Exonuclease;
RNase_T,Exonuclease, ,CUFF.18460.2
(443 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g029410.1 | small RNA degrading nuclease | HC | chr1:10081... 748 0.0
Medtr1g029410.2 | small RNA degrading nuclease | HC | chr1:10081... 434 e-121
Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333... 135 1e-31
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335... 135 1e-31
Medtr2g078510.1 | RNA exonuclease-like protein | HC | chr2:32752... 68 2e-11
Medtr2g100280.1 | RNA exonuclease-like protein | HC | chr2:43066... 57 4e-08
>Medtr1g029410.1 | small RNA degrading nuclease | HC |
chr1:10081820-10091351 | 20130731
Length = 571
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/445 (81%), Positives = 401/445 (90%), Gaps = 2/445 (0%)
Query: 1 MQTIDALLTCKVKRKRDENCSIMTKATLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTL 60
MQTIDALLTCK KRKRDEN SIM K+TL QQE+ GT SLS+ ELTKDIPFPVTYYTL
Sbjct: 127 MQTIDALLTCKQKRKRDENDSIMKKSTLASQQEEVSGGTGSLSFTELTKDIPFPVTYYTL 186
Query: 61 TEKDLEENGYSINKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQV 120
TE+DLEEN Y +NKPGF+STL AP GSP++EMLAVDCEMC+T EGFELTRVTLVDVKGQV
Sbjct: 187 TERDLEENEYPVNKPGFVSTLRAPPGSPYNEMLAVDCEMCITGEGFELTRVTLVDVKGQV 246
Query: 121 LIDKLVKPTNAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDL 180
L+D+LVKP+N ITDYNTRFSGIT EMLDGVTTSL DIQE+F KLVYKETILVGHSLENDL
Sbjct: 247 LLDELVKPSNPITDYNTRFSGITAEMLDGVTTSLTDIQEKFQKLVYKETILVGHSLENDL 306
Query: 181 LALKISHDLVIDTAVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLEL 240
LALKISHDLVIDTAVLYKHPRGSSHK+ALRFL KRFL REIQQSG+GHDS+EDARAT+EL
Sbjct: 307 LALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGDGHDSVEDARATMEL 366
Query: 241 ALLKIKNGPDFGSPPNFMRKKLLSILSESGKTSSLIDDISVVKRFASESSHAIPVTSDEE 300
ALLKI+NGP FG+ P+F RKKLLSIL ESGKTSS+IDDIS+VKRFASESS+AIPVTSDE+
Sbjct: 367 ALLKIRNGPSFGAAPSFTRKKLLSILGESGKTSSMIDDISIVKRFASESSNAIPVTSDED 426
Query: 301 ALAKTTKELKNEKVHFIWTQFSELYSYLKKQAEDSEKLHKRLAEMMALRTC--EKGKGFK 358
AL+KT KELKNEKV FIWTQFSEL+SYLKKQAEDSE L+K+LAEM+AL TC KGKG K
Sbjct: 427 ALSKTIKELKNEKVQFIWTQFSELHSYLKKQAEDSESLNKKLAEMIALNTCGSSKGKGLK 486
Query: 359 YNASSELKEILARMDARIRNLYMSLPTNAMVIICTGHGDTAVVRRVRRMLAEDSESNFSR 418
N S+ELKEI+ARMD RI LY SLPTNAM+I+C+GHGDTAVVRR+R+ML E+ ESN+ R
Sbjct: 487 SNISAELKEIVARMDVRIHKLYKSLPTNAMMIVCSGHGDTAVVRRLRKMLTEEGESNYGR 546
Query: 419 EKIVELLEEFQARAEVALCFVGVKH 443
EKI+E L EFQARAEVALCFVGVKH
Sbjct: 547 EKILESLGEFQARAEVALCFVGVKH 571
>Medtr1g029410.2 | small RNA degrading nuclease | HC |
chr1:10081800-10091381 | 20130731
Length = 413
Score = 434 bits (1115), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/248 (84%), Positives = 227/248 (91%)
Query: 1 MQTIDALLTCKVKRKRDENCSIMTKATLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTL 60
MQTIDALLTCK KRKRDEN SIM K+TL QQE+ GT SLS+ ELTKDIPFPVTYYTL
Sbjct: 164 MQTIDALLTCKQKRKRDENDSIMKKSTLASQQEEVSGGTGSLSFTELTKDIPFPVTYYTL 223
Query: 61 TEKDLEENGYSINKPGFLSTLPAPLGSPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQV 120
TE+DLEEN Y +NKPGF+STL AP GSP++EMLAVDCEMC+T EGFELTRVTLVDVKGQV
Sbjct: 224 TERDLEENEYPVNKPGFVSTLRAPPGSPYNEMLAVDCEMCITGEGFELTRVTLVDVKGQV 283
Query: 121 LIDKLVKPTNAITDYNTRFSGITYEMLDGVTTSLRDIQEEFLKLVYKETILVGHSLENDL 180
L+D+LVKP+N ITDYNTRFSGIT EMLDGVTTSL DIQE+F KLVYKETILVGHSLENDL
Sbjct: 284 LLDELVKPSNPITDYNTRFSGITAEMLDGVTTSLTDIQEKFQKLVYKETILVGHSLENDL 343
Query: 181 LALKISHDLVIDTAVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLEL 240
LALKISHDLVIDTAVLYKHPRGSSHK+ALRFL KRFL REIQQSG+GHDS+EDARAT+EL
Sbjct: 344 LALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGDGHDSVEDARATMEL 403
Query: 241 ALLKIKNG 248
ALLKI+NG
Sbjct: 404 ALLKIRNG 411
>Medtr1g023955.1 | small RNA degrading nuclease | HC |
chr1:7733337-7739883 | 20130731
Length = 550
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 92 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 150
M+AVDCEM + +G E L +V +VD +V + KLVKP AI DY T +G++ + L+ V
Sbjct: 142 MVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETV 201
Query: 151 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH-KTAL 209
T SL DIQ+ KL+Y TILVGHSL NDL LK+ + V+DTA +++ GS H + +L
Sbjct: 202 TCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSL 261
Query: 210 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSILSES 269
L + L E+++ G HD ++DA AT++L L KIK+G D P +++ +SES
Sbjct: 262 NSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEP----VSES 317
Query: 270 GKTSSLIDDISVVKRFASESSHAIPVTSDEEAL 302
+ LI H IP T + EAL
Sbjct: 318 EMSKLLI--------------HRIPTTVNTEAL 336
>Medtr1g023955.2 | small RNA degrading nuclease | HC |
chr1:7733526-7739883 | 20130731
Length = 550
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 92 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 150
M+AVDCEM + +G E L +V +VD +V + KLVKP AI DY T +G++ + L+ V
Sbjct: 142 MVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETV 201
Query: 151 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH-KTAL 209
T SL DIQ+ KL+Y TILVGHSL NDL LK+ + V+DTA +++ GS H + +L
Sbjct: 202 TCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSL 261
Query: 210 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSILSES 269
L + L E+++ G HD ++DA AT++L L KIK+G D P +++ +SES
Sbjct: 262 NSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEP----VSES 317
Query: 270 GKTSSLIDDISVVKRFASESSHAIPVTSDEEAL 302
+ LI H IP T + EAL
Sbjct: 318 EMSKLLI--------------HRIPTTVNTEAL 336
>Medtr2g078510.1 | RNA exonuclease-like protein | HC |
chr2:32752393-32757824 | 20130731
Length = 283
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 91 EMLAVDCEMCVTSEGFE--LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLD 148
+ +A+DCEM +G + L RVTLV+ G V+ D+ V+P + D+ T+ SGI L
Sbjct: 120 DAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLR 179
Query: 149 GVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDL--VIDTAVLYKHPRGSSHK 206
Q++ +L++ ILVGH+L NDL AL +SH + DT+ R S+ +
Sbjct: 180 K-AKDFCTAQKKVAELIHGR-ILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLR-STGR 236
Query: 207 TALRFLAKRFLKREIQ 222
ALR LA L +IQ
Sbjct: 237 VALRHLASEHLGAKIQ 252
>Medtr2g100280.1 | RNA exonuclease-like protein | HC |
chr2:43066107-43062965 | 20130731
Length = 366
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 23/167 (13%)
Query: 93 LAVDCEMCVT-SEG-FELT-RVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEML-D 148
+A+DCEM S+G EL RV LVD ++ VKP +T+Y +G+T E L D
Sbjct: 139 IAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIPVTNYRYDITGLTEEHLQD 198
Query: 149 GVTTSLRDIQEEFLKLVY-------------KETILVGHSLENDLLALKISH--DLVIDT 193
G+ L++++E+ L+++Y K +LVGH L +DL L +S+ L+ DT
Sbjct: 199 GM--PLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLGMSYPDHLMRDT 256
Query: 194 AVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLEL 240
A + + +L++L + +L +IQ H+ ED + + L
Sbjct: 257 AKYRPLMKTNLVCYSLKYLTRTYLGYDIQTG--THNPYEDCISVMRL 301