Miyakogusa Predicted Gene

Lj0g3v0277869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277869.1 Non Characterized Hit- tr|I1LXA9|I1LXA9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,76.79,0,EXONUCLEASE
FAMILY PROTEIN,NULL; EXONUCLEASE,NULL; no description,Exonuclease;
RNase_T,Exonuclease, ,CUFF.18460.1
         (595 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g029410.1 | small RNA degrading nuclease | HC | chr1:10081...   908   0.0  
Medtr1g029410.2 | small RNA degrading nuclease | HC | chr1:10081...   593   e-169
Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333...   134   2e-31
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335...   134   2e-31
Medtr2g078510.1 | RNA exonuclease-like protein | HC | chr2:32752...    68   3e-11
Medtr2g100280.1 | RNA exonuclease-like protein | HC | chr2:43066...    57   5e-08

>Medtr1g029410.1 | small RNA degrading nuclease | HC |
           chr1:10081820-10091351 | 20130731
          Length = 571

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/599 (75%), Positives = 502/599 (83%), Gaps = 32/599 (5%)

Query: 1   MDSSEAN--TESPSRAEQDSTANKKCTKFYDIYGPEGKADVVFKSPEDNSTLNLNDIQGL 58
           M SSE    T S    E+D   +     FYD+YGP+ KADVVFKS EDNSTL+L DIQGL
Sbjct: 1   MGSSENKFKTLSTVEEEEDEDGSTINNNFYDVYGPQAKADVVFKS-EDNSTLSLVDIQGL 59

Query: 59  ITWVLGEGFMPSWVFIKNKPLIPKVMMLYMPGLDAALFLSQSKMLPSLKKFCGKPRPVLA 118
           +TWVLGEGFMPSWVFIKNKPLI KV+MLY+PGLDAAL+LS SK+LP+LKK CGKPRPV A
Sbjct: 60  VTWVLGEGFMPSWVFIKNKPLILKVVMLYIPGLDAALYLSLSKVLPNLKKACGKPRPVHA 119

Query: 119 LRSVEENVFTSNILQNVVPIDLFFLILASCVSDGMQTIDALLTCKVKRKRDENCSIMTKA 178
           L                           SCVSD MQTIDALLTCK KRKRDEN SIM K+
Sbjct: 120 L---------------------------SCVSDSMQTIDALLTCKQKRKRDENDSIMKKS 152

Query: 179 TLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTLTEKDLEENGYSINKPGFLSTLPAPLG 238
           TL  QQE+   GT SLS+ ELTKDIPFPVTYYTLTE+DLEEN Y +NKPGF+STL AP G
Sbjct: 153 TLASQQEEVSGGTGSLSFTELTKDIPFPVTYYTLTERDLEENEYPVNKPGFVSTLRAPPG 212

Query: 239 SPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEM 298
           SP++EMLAVDCEMC+T EGFELTRVTLVDVKGQVL+D+LVKP+N ITDYNTRFSGIT EM
Sbjct: 213 SPYNEMLAVDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEM 272

Query: 299 LDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHK 358
           LDGVTTSL DIQE+F KLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHK
Sbjct: 273 LDGVTTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHK 332

Query: 359 TALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSIL 418
           +ALRFL KRFL REIQQSG+GHDS+EDARAT+ELALLKI+NGP FG+ P+F RKKLLSIL
Sbjct: 333 SALRFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRNGPSFGAAPSFTRKKLLSIL 392

Query: 419 SESGKTSSLIDDISVVKRFASESSHAIPVTSDEEALAKTTKELKNEKVHFIWTQFSELYS 478
            ESGKTSS+IDDIS+VKRFASESS+AIPVTSDE+AL+KT KELKNEKV FIWTQFSEL+S
Sbjct: 393 GESGKTSSMIDDISIVKRFASESSNAIPVTSDEDALSKTIKELKNEKVQFIWTQFSELHS 452

Query: 479 YLKKQAEDSEKLHKRLAEMMALRTC--EKGKGFKYNASSELKEILARMDARIRNLYMSLP 536
           YLKKQAEDSE L+K+LAEM+AL TC   KGKG K N S+ELKEI+ARMD RI  LY SLP
Sbjct: 453 YLKKQAEDSESLNKKLAEMIALNTCGSSKGKGLKSNISAELKEIVARMDVRIHKLYKSLP 512

Query: 537 TNAMVIICTGHGDTAVVRRVRRMLAEDSESNFSREKIVELLEEFQARAEVALCFVGVKH 595
           TNAM+I+C+GHGDTAVVRR+R+ML E+ ESN+ REKI+E L EFQARAEVALCFVGVKH
Sbjct: 513 TNAMMIVCSGHGDTAVVRRLRKMLTEEGESNYGREKILESLGEFQARAEVALCFVGVKH 571


>Medtr1g029410.2 | small RNA degrading nuclease | HC |
           chr1:10081800-10091381 | 20130731
          Length = 413

 Score =  593 bits (1529), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/402 (74%), Positives = 328/402 (81%), Gaps = 30/402 (7%)

Query: 1   MDSSEAN--TESPSRAEQDSTANKKCTKFYDIYGPEGKADVVFKSPEDNSTLNLNDIQGL 58
           M SSE    T S    E+D   +     FYD+YGP+ KADVVFKS EDNSTL+L DIQGL
Sbjct: 38  MGSSENKFKTLSTVEEEEDEDGSTINNNFYDVYGPQAKADVVFKS-EDNSTLSLVDIQGL 96

Query: 59  ITWVLGEGFMPSWVFIKNKPLIPKVMMLYMPGLDAALFLSQSKMLPSLKKFCGKPRPVLA 118
           +TWVLGEGFMPSWVFIKNKPLI KV+MLY+PGLDAAL+LS SK+LP+LKK CGKPRPV A
Sbjct: 97  VTWVLGEGFMPSWVFIKNKPLILKVVMLYIPGLDAALYLSLSKVLPNLKKACGKPRPVHA 156

Query: 119 LRSVEENVFTSNILQNVVPIDLFFLILASCVSDGMQTIDALLTCKVKRKRDENCSIMTKA 178
           L                           SCVSD MQTIDALLTCK KRKRDEN SIM K+
Sbjct: 157 L---------------------------SCVSDSMQTIDALLTCKQKRKRDENDSIMKKS 189

Query: 179 TLTPQQEDGCVGTNSLSYMELTKDIPFPVTYYTLTEKDLEENGYSINKPGFLSTLPAPLG 238
           TL  QQE+   GT SLS+ ELTKDIPFPVTYYTLTE+DLEEN Y +NKPGF+STL AP G
Sbjct: 190 TLASQQEEVSGGTGSLSFTELTKDIPFPVTYYTLTERDLEENEYPVNKPGFVSTLRAPPG 249

Query: 239 SPFHEMLAVDCEMCVTSEGFELTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEM 298
           SP++EMLAVDCEMC+T EGFELTRVTLVDVKGQVL+D+LVKP+N ITDYNTRFSGIT EM
Sbjct: 250 SPYNEMLAVDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEM 309

Query: 299 LDGVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHK 358
           LDGVTTSL DIQE+F KLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHK
Sbjct: 310 LDGVTTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHK 369

Query: 359 TALRFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNG 400
           +ALRFL KRFL REIQQSG+GHDS+EDARAT+ELALLKI+NG
Sbjct: 370 SALRFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRNG 411


>Medtr1g023955.1 | small RNA degrading nuclease | HC |
           chr1:7733337-7739883 | 20130731
          Length = 550

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 20/213 (9%)

Query: 244 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 302
           M+AVDCEM +  +G E L +V +VD   +V + KLVKP  AI DY T  +G++ + L+ V
Sbjct: 142 MVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETV 201

Query: 303 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKT-AL 361
           T SL DIQ+   KL+Y  TILVGHSL NDL  LK+ +  V+DTA +++   GS H+  +L
Sbjct: 202 TCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSL 261

Query: 362 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSILSES 421
             L +  L  E+++ G  HD ++DA AT++L L KIK+G D   P   +++     +SES
Sbjct: 262 NSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEP----VSES 317

Query: 422 GKTSSLIDDISVVKRFASESSHAIPVTSDEEAL 454
             +  LI              H IP T + EAL
Sbjct: 318 EMSKLLI--------------HRIPTTVNTEAL 336


>Medtr1g023955.2 | small RNA degrading nuclease | HC |
           chr1:7733526-7739883 | 20130731
          Length = 550

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 20/213 (9%)

Query: 244 MLAVDCEMCVTSEGFE-LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLDGV 302
           M+AVDCEM +  +G E L +V +VD   +V + KLVKP  AI DY T  +G++ + L+ V
Sbjct: 142 MVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQDLETV 201

Query: 303 TTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKT-AL 361
           T SL DIQ+   KL+Y  TILVGHSL NDL  LK+ +  V+DTA +++   GS H+  +L
Sbjct: 202 TCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHRRPSL 261

Query: 362 RFLAKRFLKREIQQSGNGHDSIEDARATLELALLKIKNGPDFGSPPNFMRKKLLSILSES 421
             L +  L  E+++ G  HD ++DA AT++L L KIK+G D   P   +++     +SES
Sbjct: 262 NSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEP----VSES 317

Query: 422 GKTSSLIDDISVVKRFASESSHAIPVTSDEEAL 454
             +  LI              H IP T + EAL
Sbjct: 318 EMSKLLI--------------HRIPTTVNTEAL 336


>Medtr2g078510.1 | RNA exonuclease-like protein | HC |
           chr2:32752393-32757824 | 20130731
          Length = 283

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 7/136 (5%)

Query: 243 EMLAVDCEMCVTSEGFE--LTRVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEMLD 300
           + +A+DCEM    +G +  L RVTLV+  G V+ D+ V+P   + D+ T+ SGI    L 
Sbjct: 120 DAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLR 179

Query: 301 GVTTSLRDIQEEFLKLVYKETILVGHSLENDLLALKISHDL--VIDTAVLYKHPRGSSHK 358
                    Q++  +L++   ILVGH+L NDL AL +SH    + DT+      R S+ +
Sbjct: 180 K-AKDFCTAQKKVAELIHGR-ILVGHALSNDLKALLLSHPKKDIRDTSEYPPFLR-STGR 236

Query: 359 TALRFLAKRFLKREIQ 374
            ALR LA   L  +IQ
Sbjct: 237 VALRHLASEHLGAKIQ 252


>Medtr2g100280.1 | RNA exonuclease-like protein | HC |
           chr2:43066107-43062965 | 20130731
          Length = 366

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 23/167 (13%)

Query: 245 LAVDCEMCVT-SEG-FELT-RVTLVDVKGQVLIDKLVKPTNAITDYNTRFSGITYEML-D 300
           +A+DCEM    S+G  EL  RV LVD    ++    VKP   +T+Y    +G+T E L D
Sbjct: 139 IAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIPVTNYRYDITGLTEEHLQD 198

Query: 301 GVTTSLRDIQEEFLKLVY-------------KETILVGHSLENDLLALKISH--DLVIDT 345
           G+   L++++E+ L+++Y             K  +LVGH L +DL  L +S+   L+ DT
Sbjct: 199 GM--PLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLGMSYPDHLMRDT 256

Query: 346 AVLYKHPRGSSHKTALRFLAKRFLKREIQQSGNGHDSIEDARATLEL 392
           A      + +    +L++L + +L  +IQ     H+  ED  + + L
Sbjct: 257 AKYRPLMKTNLVCYSLKYLTRTYLGYDIQTG--THNPYEDCISVMRL 301