Miyakogusa Predicted Gene

Lj0g3v0277349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277349.1 Non Characterized Hit- tr|I1MK11|I1MK11_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.30176
PE,76.74,0.0000000002, ,CUFF.18410.1
         (49 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g020880.1 | RelA/SpoT-like protein RSH2 | HC | chr8:737042...    50   6e-07
Medtr8g020880.2 | RelA/SpoT-like protein RSH2 | HC | chr8:737042...    50   6e-07

>Medtr8g020880.1 | RelA/SpoT-like protein RSH2 | HC |
          chr8:7370427-7366192 | 20130731
          Length = 726

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 27/34 (79%), Gaps = 4/34 (11%)

Query: 1  MVVSTVALYASPPSSVCSTPHPCPPHTSYDFKLG 34
          M VST+ALYASPPSSVCSTPH      +YDF+LG
Sbjct: 1  MAVSTIALYASPPSSVCSTPH----QINYDFELG 30


>Medtr8g020880.2 | RelA/SpoT-like protein RSH2 | HC |
          chr8:7370427-7366669 | 20130731
          Length = 682

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 27/34 (79%), Gaps = 4/34 (11%)

Query: 1  MVVSTVALYASPPSSVCSTPHPCPPHTSYDFKLG 34
          M VST+ALYASPPSSVCSTPH      +YDF+LG
Sbjct: 1  MAVSTIALYASPPSSVCSTPH----QINYDFELG 30