Miyakogusa Predicted Gene

Lj0g3v0276759.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276759.1 tr|A9S0R2|A9S0R2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162167,35.2,0.00000003,no description,NULL; SUBFAMILY
NOT NAMED,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED,NULL;
L30e,CUFF.18364.1
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g103265.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family...   256   9e-69
Medtr8g103265.2 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family...   236   7e-63

>Medtr8g103265.1 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family
           protein | HC | chr8:43493015-43490196 | 20130731
          Length = 222

 Score =  256 bits (654), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 147/191 (76%), Gaps = 8/191 (4%)

Query: 1   MPSRSS--AKAPKKQGNNSNT------GGTASLENNSYEGERLTHLLQSIRRETELARRL 52
           MPS  S  AK PK  G   N           SLE   YEG+ LT LLQ I R  E AR L
Sbjct: 1   MPSSRSNNAKTPKNHGGTGNNPNPNTNSNLTSLETICYEGKHLTILLQPILRGVESARHL 60

Query: 53  DGCSLPEKIWLKQQFSIGVNDVTRVLERMEPCAELESSAELIPLIRSNHKAPSVKLQAVL 112
           DG SLPEKIW+KQQF+IGVNDVTRVLERM+PCAE E SA+L+P I SNHK PSVKLQAVL
Sbjct: 61  DGSSLPEKIWIKQQFAIGVNDVTRVLERMKPCAEFERSAQLLPSITSNHKTPSVKLQAVL 120

Query: 113 VASDCNPRWLTKHLQSLASSRSVPLIFIRDNKEGSLRLGELVKLKTAVAIGIKVKGSVIN 172
           VASDC+ RWLTKHLQSLASSRSVPLIF++DNKEGSLRLGELVKLKTA+ IGIKVKG+ IN
Sbjct: 121 VASDCSSRWLTKHLQSLASSRSVPLIFVKDNKEGSLRLGELVKLKTAITIGIKVKGNAIN 180

Query: 173 KTVEDIIQADA 183
           K VEDIIQ D 
Sbjct: 181 KIVEDIIQVDG 191


>Medtr8g103265.2 | ribosomal protein L7Ae/L30e/S12e/Gadd45 family
           protein | HC | chr8:43491951-43490196 | 20130731
          Length = 173

 Score =  236 bits (603), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 125/142 (88%)

Query: 42  IRRETELARRLDGCSLPEKIWLKQQFSIGVNDVTRVLERMEPCAELESSAELIPLIRSNH 101
           + R  E AR LDG SLPEKIW+KQQF+IGVNDVTRVLERM+PCAE E SA+L+P I SNH
Sbjct: 1   MSRGVESARHLDGSSLPEKIWIKQQFAIGVNDVTRVLERMKPCAEFERSAQLLPSITSNH 60

Query: 102 KAPSVKLQAVLVASDCNPRWLTKHLQSLASSRSVPLIFIRDNKEGSLRLGELVKLKTAVA 161
           K PSVKLQAVLVASDC+ RWLTKHLQSLASSRSVPLIF++DNKEGSLRLGELVKLKTA+ 
Sbjct: 61  KTPSVKLQAVLVASDCSSRWLTKHLQSLASSRSVPLIFVKDNKEGSLRLGELVKLKTAIT 120

Query: 162 IGIKVKGSVINKTVEDIIQADA 183
           IGIKVKG+ INK VEDIIQ D 
Sbjct: 121 IGIKVKGNAINKIVEDIIQVDG 142