Miyakogusa Predicted Gene

Lj0g3v0276659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276659.1 tr|A0YX99|A0YX99_LYNSP Protoporphyrinogen oxidase
OS=Lyngbya sp. (strain PCC 8106) GN=L8106_12215
PE,37.82,5e-19,Amino_oxidase,Amine oxidase; FAD-linked reductases,
C-terminal domain,NULL; no description,NULL; pro,CUFF.18363.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g085730.1 | protoporphyrinogen IX oxidase | HC | chr1:3832...   190   5e-49
Medtr1g085730.2 | protoporphyrinogen IX oxidase | HC | chr1:3832...    87   7e-18

>Medtr1g085730.1 | protoporphyrinogen IX oxidase | HC |
           chr1:38320812-38326944 | 20130731
          Length = 551

 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 101/120 (84%)

Query: 1   MLPNAISARLGNXXXXXXXXXXXXXXXXGGYSLTYETPEGVVSLQSKTVVMTIPSHIANT 60
           MLPNAISARLGN                G YSLTYETPEGVVSLQSKTV+MTIPSH+A+ 
Sbjct: 299 MLPNAISARLGNKVKLSWKLLSISKLDSGEYSLTYETPEGVVSLQSKTVIMTIPSHVASP 358

Query: 61  LLRPVSPAAADALSKFHYPPVAAVSISYPKEDIRSECLIDGELKGFGQLHPRSQGVETLG 120
           LLRP+SPAAADALSKF+YPPVAAVSISYPKE IRSECLIDGELKGFGQLHPRSQGV+TLG
Sbjct: 359 LLRPLSPAAADALSKFYYPPVAAVSISYPKEAIRSECLIDGELKGFGQLHPRSQGVQTLG 418


>Medtr1g085730.2 | protoporphyrinogen IX oxidase | HC |
           chr1:38320812-38326921 | 20130731
          Length = 394

 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 54/79 (68%), Gaps = 2/79 (2%)

Query: 1   MLPNAISARLGNXXXXXXXXXXXXXXXXGGYSLTYETPEGVVSLQSKTVVMTIPSHIANT 60
           MLPNAISARLGN                G YSLTYETPEGVVSLQSKTV+MTIPSH+A+ 
Sbjct: 299 MLPNAISARLGNKVKLSWKLLSISKLDSGEYSLTYETPEGVVSLQSKTVIMTIPSHVASP 358

Query: 61  LLRPVSPAAADA--LSKFH 77
           LLRP+S + +    +S FH
Sbjct: 359 LLRPLSVSFSKKWIISMFH 377