Miyakogusa Predicted Gene

Lj0g3v0276329.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276329.2 tr|Q1PFY7|Q1PFY7_ARATH CCT motif-containing
protein OS=Arabidopsis thaliana GN=At1g04500 PE=2
SV=1,42.75,6e-19,seg,NULL; CCT,CCT domain,CUFF.18336.2
         (248 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096080.1 | CCT motif protein | HC | chr2:41011109-4101337...   190   9e-49
Medtr4g061910.1 | CCT motif protein | HC | chr4:22940539-2294394...   149   2e-36
Medtr4g061823.1 | CCT motif protein | HC | chr4:22888875-2289227...   149   2e-36
Medtr8g098725.2 | CCT motif protein | HC | chr8:41224283-4122117...    69   3e-12
Medtr8g098725.1 | CCT motif protein | HC | chr8:41223454-4122117...    69   5e-12
Medtr5g010120.1 | CCT motif protein | HC | chr5:2635582-2637479 ...    62   4e-10
Medtr1g073350.1 | CCT motif protein | HC | chr1:32553600-3255596...    61   9e-10
Medtr2g068730.1 | CCT motif protein | HC | chr2:28534921-2853693...    59   5e-09
Medtr1g044785.1 | CCT motif protein | HC | chr1:16921077-1692325...    57   2e-08
Medtr3g091340.3 | CCT motif protein | HC | chr3:41548948-4154691...    54   1e-07
Medtr3g091340.2 | CCT motif protein | HC | chr3:41549218-4154691...    54   1e-07
Medtr3g091340.1 | CCT motif protein | HC | chr3:41550030-4154691...    54   1e-07

>Medtr2g096080.1 | CCT motif protein | HC | chr2:41011109-41013371 |
           20130731
          Length = 251

 Score =  190 bits (483), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/261 (46%), Positives = 139/261 (53%), Gaps = 36/261 (13%)

Query: 7   SNIPLSSPF------------------HELTEF-DTLSQLXXXXXXXXXXXXXXXXXXXX 47
           +NIP S+PF                   EL  F DTLSQL                    
Sbjct: 8   NNIPFSTPFLLHSSSPFMEQNNSIPDFTELDSFQDTLSQLNNSELSSGYSSYG------- 60

Query: 48  PTSEAQASPTLMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSA 107
             S + ++P LMQRS+SSHSL  N     NGT H+P SAFFA+LLDSD D P VR+V S 
Sbjct: 61  -GSPSPSTPILMQRSISSHSLQYN-----NGTHHYPLSAFFADLLDSD-DAP-VRKVCST 112

Query: 108 GDLQRINXXXXXXXXXXXXXXXXXXXXXMIIEGMNRVCRYSPEEKKMRIEXXXXXXXXXX 167
           GDLQRIN                     MIIEGM+RVC YSPEEKK+RIE          
Sbjct: 113 GDLQRINGMQHNHHHHVDSPLSSESS--MIIEGMSRVCPYSPEEKKVRIERYRIKRNQRN 170

Query: 168 XXXXXXYACRKTLADSRPRVRGRFARNDETDQKPTVQWSHIGAAXXXXXXXXSWVSIFDS 227
                 Y CRKTLAD RPR+RGRFARNDE D+KP V+WSHIG           W +IF+S
Sbjct: 171 FNKKIKYVCRKTLADRRPRIRGRFARNDEIDKKPIVEWSHIGGGEEEDEEDEKWNNIFNS 230

Query: 228 IVAAANLTQESQASSSFGLLY 248
           IVAA  +  E Q SSSFGLLY
Sbjct: 231 IVAANLVHDEFQGSSSFGLLY 251


>Medtr4g061910.1 | CCT motif protein | HC | chr4:22940539-22943940 |
           20130731
          Length = 242

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 105/194 (54%), Gaps = 13/194 (6%)

Query: 58  LMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSAGDL-QRINXX 116
           LMQRS+SSHSL  N   +     HHPFS  FAELLD  Q+   VRRVYS GDL QR+   
Sbjct: 59  LMQRSISSHSLQKNDVPH-----HHPFSTLFAELLD--QENGPVRRVYSTGDLDQRVGGM 111

Query: 117 XXXXXXXXXXXXXXXXXXXMIIEGMNR-VCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYA 175
                              MIIE M+R    YSPEEKK+RIE                Y 
Sbjct: 112 QQYYHQSDSPLSTESN---MIIEEMSRPASPYSPEEKKVRIERYRSKKNQRNYNKKIKYV 168

Query: 176 CRKTLADSRPRVRGRFARNDETDQKPTVQWSHI-GAAXXXXXXXXSWVSIFDSIVAAANL 234
           CRKTLADSRPR+RGRFA+NDE  + P  QWSHI            +W S+FDS+V  +NL
Sbjct: 169 CRKTLADSRPRIRGRFAKNDEIVRNPPNQWSHISNGEELEDEEEENWDSLFDSLVPTSNL 228

Query: 235 TQESQASSSFGLLY 248
             E   SSS+ +LY
Sbjct: 229 APEEHHSSSYSVLY 242


>Medtr4g061823.1 | CCT motif protein | HC | chr4:22888875-22892276 |
           20130731
          Length = 242

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 105/194 (54%), Gaps = 13/194 (6%)

Query: 58  LMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSAGDL-QRINXX 116
           LMQRS+SSHSL  N   +     HHPFS  FAELLD  Q+   VRRVYS GDL QR+   
Sbjct: 59  LMQRSISSHSLQKNDVPH-----HHPFSTLFAELLD--QENGPVRRVYSTGDLDQRVGGM 111

Query: 117 XXXXXXXXXXXXXXXXXXXMIIEGMNR-VCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYA 175
                              MIIE M+R    YSPEEKK+RIE                Y 
Sbjct: 112 QQYYHQSDSPLSTESN---MIIEEMSRPASPYSPEEKKVRIERYRSKKNQRNYNKKIKYV 168

Query: 176 CRKTLADSRPRVRGRFARNDETDQKPTVQWSHI-GAAXXXXXXXXSWVSIFDSIVAAANL 234
           CRKTLADSRPR+RGRFA+NDE  + P  QWSHI            +W S+FDS+V  +NL
Sbjct: 169 CRKTLADSRPRIRGRFAKNDEIVRNPPNQWSHISNGEELEDEEEENWDSLFDSLVPTSNL 228

Query: 235 TQESQASSSFGLLY 248
             E   SSS+ +LY
Sbjct: 229 APEEHHSSSYSVLY 242


>Medtr8g098725.2 | CCT motif protein | HC | chr8:41224283-41221171 |
           20130731
          Length = 328

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 67/146 (45%), Gaps = 13/146 (8%)

Query: 59  MQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTP--AVRRVYSAGDLQRINXX 116
           MQRS SS+S     K +     HH      ++    D  +P  ++RRV S GDLQ +   
Sbjct: 143 MQRSFSSNSFEK--KPSFLFQTHHDNLVDSSKFQRHDLSSPENSLRRVCSTGDLQSLKQN 200

Query: 117 XXXXXXXXXXXXXXXXXXXMIIEGMN-RVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYA 175
                               + E  N +V RYS EE+K +I                 YA
Sbjct: 201 MKENNMSPTEGN--------LQEEQNFKVGRYSAEERKEKISKYRAKRTQRNFNKTIKYA 252

Query: 176 CRKTLADSRPRVRGRFARNDETDQKP 201
           CRKTLAD+RPRVRGRFARNDE  + P
Sbjct: 253 CRKTLADNRPRVRGRFARNDEPTEIP 278


>Medtr8g098725.1 | CCT motif protein | HC | chr8:41223454-41221171 |
           20130731
          Length = 324

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 67/146 (45%), Gaps = 17/146 (11%)

Query: 59  MQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTP--AVRRVYSAGDLQRINXX 116
           MQRS SS+S     K +     HH      ++    D  +P  ++RRV S GDLQ +   
Sbjct: 143 MQRSFSSNSFEK--KPSFLFQTHHDNLVDSSKFQRHDLSSPENSLRRVCSTGDLQNMKEN 200

Query: 117 XXXXXXXXXXXXXXXXXXXMIIEGMN-RVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYA 175
                               + E  N +V RYS EE+K +I                 YA
Sbjct: 201 NMSPTEGN------------LQEEQNFKVGRYSAEERKEKISKYRAKRTQRNFNKTIKYA 248

Query: 176 CRKTLADSRPRVRGRFARNDETDQKP 201
           CRKTLAD+RPRVRGRFARNDE  + P
Sbjct: 249 CRKTLADNRPRVRGRFARNDEPTEIP 274


>Medtr5g010120.1 | CCT motif protein | HC | chr5:2635582-2637479 |
           20130731
          Length = 251

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 65/149 (43%), Gaps = 22/149 (14%)

Query: 58  LMQRSVSSHSLHTNTK--SNNNGTCHHPFSAFFAELLDSDQDT---PAVRRVYSAGDLQR 112
           LMQRS + ++ H      S      H     F    L S +++     +RR  SAGDLQ 
Sbjct: 91  LMQRSYNCNNFHEKLDFPSEAYHNTHMDSPIFQCHELSSPENSFFNGQIRRACSAGDLQN 150

Query: 113 INXXXXXXXXXXXXXXXXXXXXXMIIEGMNRVCRYSPEEKKMRIEXXXXXXXXXXXXXXX 172
           +                         E   +V RYS EE+K +I                
Sbjct: 151 M-----------------ATPGSQTDEVNFKVGRYSLEERKEKISRYRAKRSRRKFNKII 193

Query: 173 XYACRKTLADSRPRVRGRFARNDETDQKP 201
            YACRKTLAD+R R+RGRFARND+T++ P
Sbjct: 194 KYACRKTLADNRTRIRGRFARNDKTNEIP 222


>Medtr1g073350.1 | CCT motif protein | HC | chr1:32553600-32555963 |
           20130731
          Length = 414

 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%)

Query: 101 VRRVYSAGDLQRINXXXXXXXXXXXXXXXXXXXXXMIIEGMNRVCRYSPEEKKMRIEXXX 160
           ++RV++  DLQ +N                      + +   +V + S E++K +I    
Sbjct: 265 IQRVFNPPDLQALNPENQQLVAGAGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYM 324

Query: 161 XXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDE 196
                        YACRKTLADSRPRVRGRFA+ND+
Sbjct: 325 KKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDD 360


>Medtr2g068730.1 | CCT motif protein | HC | chr2:28534921-28536937 |
           20130731
          Length = 266

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 33/55 (60%)

Query: 143 RVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDET 197
           +V RYS EE+K RI                 YACRKTLAD R RVRGRFARN+ET
Sbjct: 154 KVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNET 208


>Medtr1g044785.1 | CCT motif protein | HC | chr1:16921077-16923253 |
           20130731
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 143 RVCRYSPEEKKMRIEXXXXXXXXXXXXXXXXYACRKTLADSRPRVRGRFARNDE 196
           +V + S E++K +I                 YACRKTLADSRPRVRGRFA+ND+
Sbjct: 125 KVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDD 178


>Medtr3g091340.3 | CCT motif protein | HC | chr3:41548948-41546916 |
           20130731
          Length = 252

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 25/26 (96%)

Query: 174 YACRKTLADSRPRVRGRFARNDETDQ 199
           YACRK LADS+PRVRGRFA+N+ETDQ
Sbjct: 223 YACRKALADSQPRVRGRFAKNEETDQ 248


>Medtr3g091340.2 | CCT motif protein | HC | chr3:41549218-41546916 |
           20130731
          Length = 245

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 25/26 (96%)

Query: 174 YACRKTLADSRPRVRGRFARNDETDQ 199
           YACRK LADS+PRVRGRFA+N+ETDQ
Sbjct: 216 YACRKALADSQPRVRGRFAKNEETDQ 241


>Medtr3g091340.1 | CCT motif protein | HC | chr3:41550030-41546916 |
           20130731
          Length = 281

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 25/26 (96%)

Query: 174 YACRKTLADSRPRVRGRFARNDETDQ 199
           YACRK LADS+PRVRGRFA+N+ETDQ
Sbjct: 252 YACRKALADSQPRVRGRFAKNEETDQ 277