Miyakogusa Predicted Gene

Lj0g3v0276329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276329.1 Non Characterized Hit- tr|K4DAZ2|K4DAZ2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,49.29,2e-17,seg,NULL,CUFF.18336.1
         (158 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096080.1 | CCT motif protein | HC | chr2:41011109-4101337...   101   3e-22
Medtr4g061910.1 | CCT motif protein | HC | chr4:22940539-2294394...    75   3e-14
Medtr4g061823.1 | CCT motif protein | HC | chr4:22888875-2289227...    75   3e-14

>Medtr2g096080.1 | CCT motif protein | HC | chr2:41011109-41013371 |
           20130731
          Length = 251

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 87/171 (50%), Gaps = 36/171 (21%)

Query: 7   SNIPLSSPF------------------HELTEF-DTLSQLXXXXXXXXXXXXXXXXXXXX 47
           +NIP S+PF                   EL  F DTLSQL                    
Sbjct: 8   NNIPFSTPFLLHSSSPFMEQNNSIPDFTELDSFQDTLSQLNNSELSSGYSSYG------- 60

Query: 48  PTSEAQASPTLMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSA 107
             S + ++P LMQRS+SSHSL  N     NGT H+P SAFFA+LLDSD D P VR+V S 
Sbjct: 61  -GSPSPSTPILMQRSISSHSLQYN-----NGTHHYPLSAFFADLLDSD-DAP-VRKVCST 112

Query: 108 GDLQRINXXXXXXXXXXXXXXXXXXXXXMIIEGMNRVCRYSPEEKKMRIER 158
           GDLQRIN                     MIIEGM+RVC YSPEEKK+RIER
Sbjct: 113 GDLQRINGMQHNHHHHVDSPLSSESS--MIIEGMSRVCPYSPEEKKVRIER 161


>Medtr4g061910.1 | CCT motif protein | HC | chr4:22940539-22943940 |
           20130731
          Length = 242

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 57/103 (55%), Gaps = 12/103 (11%)

Query: 58  LMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSAGDL-QRINXX 116
           LMQRS+SSHSL  N   +     HHPFS  FAELL  DQ+   VRRVYS GDL QR+   
Sbjct: 59  LMQRSISSHSLQKNDVPH-----HHPFSTLFAELL--DQENGPVRRVYSTGDLDQRVG-- 109

Query: 117 XXXXXXXXXXXXXXXXXXXMIIEGMNR-VCRYSPEEKKMRIER 158
                              MIIE M+R    YSPEEKK+RIER
Sbjct: 110 -GMQQYYHQSDSPLSTESNMIIEEMSRPASPYSPEEKKVRIER 151


>Medtr4g061823.1 | CCT motif protein | HC | chr4:22888875-22892276 |
           20130731
          Length = 242

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 57/103 (55%), Gaps = 12/103 (11%)

Query: 58  LMQRSVSSHSLHTNTKSNNNGTCHHPFSAFFAELLDSDQDTPAVRRVYSAGDL-QRINXX 116
           LMQRS+SSHSL  N   +     HHPFS  FAELL  DQ+   VRRVYS GDL QR+   
Sbjct: 59  LMQRSISSHSLQKNDVPH-----HHPFSTLFAELL--DQENGPVRRVYSTGDLDQRVG-- 109

Query: 117 XXXXXXXXXXXXXXXXXXXMIIEGMNR-VCRYSPEEKKMRIER 158
                              MIIE M+R    YSPEEKK+RIER
Sbjct: 110 -GMQQYYHQSDSPLSTESNMIIEEMSRPASPYSPEEKKVRIER 151