Miyakogusa Predicted Gene

Lj0g3v0276309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276309.1 Non Characterized Hit- tr|K4CP84|K4CP84_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,36.73,1e-18,seg,NULL,CUFF.18370.1
         (302 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g029550.1 | hypothetical protein | HC | chr1:10168072-1017...   147   1e-35
Medtr3g088815.1 | hypothetical protein | HC | chr3:40636926-4063...    80   2e-15

>Medtr1g029550.1 | hypothetical protein | HC |
           chr1:10168072-10171905 | 20130731
          Length = 263

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/306 (38%), Positives = 139/306 (45%), Gaps = 63/306 (20%)

Query: 8   QPTISFPISDGTGQQKPQKMQTFGATNIGVLGSNKIPTTYENILSMNDVGLGVQFRPESK 67
           QPTISFP+SD   QQK                       Y N    +            +
Sbjct: 10  QPTISFPVSDDRIQQKTH------------------TKNYNNFHHHH----------HDQ 41

Query: 68  AVGDESGICSPPLWSRTPPRSPNHGKHYYRSLSPASKTQAIDRGQRELMAMVRGLPESNY 127
            V DESG+CSPPLW+ T  +S N     YRSLSP SKTQAI+RGQRELM MV+ +PES+Y
Sbjct: 42  HVEDESGMCSPPLWT-TKSKSNN-----YRSLSPESKTQAIERGQRELMEMVKNMPESSY 95

Query: 128 ELTLKDLVEHQRXXXXXXXXXXXXXXXXXXXXXSNKNVQKKEK-GSSRKVDSNKGQQVKR 186
           ELTLKDLVE                        SNKN +K+E   +SR +D         
Sbjct: 96  ELTLKDLVEEHH---------VEENNKVKERNLSNKNTRKREGIRASRNMDKK------- 139

Query: 187 SGNIDSGGFYLKMAFPISLGSKLKKNKKMEQL---ANSNSSRVSPRTSVSD----KDWWK 239
             NIDSGG YLKM FPISLGS  K +KK E L    +S++S+VSPR SVSD    KDWWK
Sbjct: 140 --NIDSGGLYLKMVFPISLGSSKKHDKKKELLVSNKSSSNSKVSPRASVSDGSVTKDWWK 197

Query: 240 XXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWPFIRRP 296
                                                               CWPFIRR 
Sbjct: 198 KKLGSSGSECGGDQSDHSGVSSMNGSIKRYGSSTTSSCSSRSNSRHEMSTSRCWPFIRRS 257

Query: 297 ESLSQK 302
           + LS+K
Sbjct: 258 QILSEK 263


>Medtr3g088815.1 | hypothetical protein | HC |
           chr3:40636926-40636040 | 20130731
          Length = 250

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 84/173 (48%), Gaps = 40/173 (23%)

Query: 79  PLWSRTPPRSPNHGKHYYRSLSPASKTQAIDRGQRELMAMVRGLPESNYELTLKDLVEHQ 138
           P WS   P        +YRSLSP S+T+AI RGQ+ELM MVR +PE NYEL+LKDLVEH 
Sbjct: 48  PRWSMNSP--------HYRSLSPVSRTEAIVRGQKELMEMVRNMPEYNYELSLKDLVEHH 99

Query: 139 RXXXXXXXXXXXXXXXXXXXXXSNKNVQKKEKGSSRKVDSNKGQQVKRSGNIDSG-GFYL 197
                                      + K+  S +K+D  K    K  G ID   GFYL
Sbjct: 100 HRTREENTEEEEED-------------KVKKNSSVKKIDDKKVHVKKNDGKIDRDRGFYL 146

Query: 198 KMAFP-ISLGSKLKKNKKMEQLANSNSSRVSPRTSVSD----------KDWWK 239
           K+  P  SLGSK KK            S+VSPR S+SD          K+WWK
Sbjct: 147 KVGLPFFSLGSKDKK-------KKKKESKVSPRPSISDVPVKGAADKEKEWWK 192