Miyakogusa Predicted Gene

Lj0g3v0276279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276279.1 tr|O65659|O65659_ARATH At4g39720 OS=Arabidopsis
thaliana GN=AT4g39720 PE=2 SV=1,39.91,2e-18,seg,NULL;
VQ,VQ,CUFF.18324.1
         (433 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g087390.1 | VQ motif protein | HC | chr3:39638412-39635830...   166   4e-41
Medtr8g090290.1 | VQ motif protein | LC | chr8:37942366-37941341...   139   5e-33
Medtr5g063310.1 | VQ motif protein | HC | chr5:26258739-26256801...    87   4e-17
Medtr2g035850.1 | VQ motif protein | HC | chr2:15214004-15215247...    52   1e-06

>Medtr3g087390.1 | VQ motif protein | HC | chr3:39638412-39635830 |
           20130731
          Length = 460

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 198/515 (38%), Positives = 224/515 (43%), Gaps = 140/515 (27%)

Query: 1   MDSANSGSMQSSSTGXXXXXXXXXXXXXXXXXFLXXXXXXXXXXXXXXXXXXXXXXVGVG 60
           MDS NSGSMQSSS G                  L                          
Sbjct: 1   MDSGNSGSMQSSSCGDEIEDYDSRGDSNNFSALLNNQQPPTTR----------------- 43

Query: 61  GLFNHHLNAAHH----------FDPFSNY-LDSIQ-TSP----------NLDMVWSRSSS 98
              NH LN   H          FDP  NY +DS+Q  SP          NLDM+W++   
Sbjct: 44  --INHVLNTPSHPSSSLPQQQMFDPLVNYYMDSLQKASPSSNQNQNSFLNLDMMWAK--- 98

Query: 99  AAVRTEPNQSDLSNNQ--------------AFLLNQFAAGAA---------TVPGSQQLS 135
           A  R+EPN +DLS+                AFLL+Q AAG           T    Q  S
Sbjct: 99  ATGRSEPNNTDLSSLMVPSSSSQQNHQQQQAFLLSQLAAGQTRENVASSVHTTHQQQHHS 158

Query: 136 MPPEXXXXXXXXXXXXXXXV------RNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTG 189
           +P E               +      RNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTG
Sbjct: 159 LPQESTSRGGISLTNDQQNLNNNNMGRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTG 218

Query: 190 IPAPPFSSSHFPRTRLDLFGASSAASS------------TPPYLLRPFAQKIKXXXXXXX 237
           I   P  SS FPRTRLDLFG+S ++ S             PPYLLRPFAQKI+       
Sbjct: 219 I-PAPPFSSPFPRTRLDLFGSSVSSRSLSSXMDPPPLHQAPPYLLRPFAQKIQPHYSFSQ 277

Query: 238 X-----XXXXXXXXXXINYLXXXXXXXFPLNMQNNT---FQSI--VQAPQKYSIGNSSLV 287
                           INY         PL MQ+N    FQSI   QAP KY  G     
Sbjct: 278 IPSSFPSLENSTNSASINY------HNHPL-MQHNQILGFQSISSSQAPTKYPHG----- 325

Query: 288 SPKTQSSLEIPPATVDSHLKMSVMEGLGLMSHAH-----VNTQIGSLH-QNMVPSSSDEG 341
               Q SLEI P       KM V E LGL SHAH      N  IG LH QNMVP+SS E 
Sbjct: 326 --AQQPSLEISP-------KMGVFEELGL-SHAHDHVNNNNNNIGVLHQQNMVPASSSE- 374

Query: 342 ALLSRINNIHNSSGNWAQRMGANAIANNDGDHHGGVFLGSLGGRSSNIIXXXXXXXXXXX 401
            + + + N   S   W QR  + +I  ++    G + +GSL G                 
Sbjct: 375 RVNNNMRNTTTSEDQWGQRTSSTSINGDNDGGGGRIVVGSLSG-----------IQERNS 423

Query: 402 XXXDFHGEKGPER-VVAA---RSEGTVESWINCSS 432
              DF  EKG E  VV A   R EGTVESWINCSS
Sbjct: 424 SASDFGVEKGQECGVVVATTTRGEGTVESWINCSS 458


>Medtr8g090290.1 | VQ motif protein | LC | chr8:37942366-37941341 |
           20130731
          Length = 341

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/329 (39%), Positives = 167/329 (50%), Gaps = 63/329 (19%)

Query: 73  FDPFSNYLDSIQTS---PN--LDMVWSRSSSAAVRTEPNQSDLSNN----------QAFL 117
           F P SNY    QT+   PN  LD +WS+     VR+EPN++DL+N           Q  +
Sbjct: 47  FHPLSNYFHPSQTTTPLPNTDLDTIWSK----PVRSEPNKTDLNNLLPISSSSSLLQNQI 102

Query: 118 LNQFAAGAATVPGSQQLSMPPEXXXXXXXXXXXXXXXVRNPKKRSRASRRAPTTVLTTDT 177
           +NQ+   A     S QL+                    +NPKKRSRASRRAPTTVLTTDT
Sbjct: 103 MNQYNNNA-----SFQLATNFHTMNDQTRNNINMQVGNQNPKKRSRASRRAPTTVLTTDT 157

Query: 178 TNFRAMVQEFTGIPA-PPF--SSSHFPRTRLDLFGASSAASSTPPYLLRPFAQKIKXXXX 234
           TNFRAMVQ+FTGIP  PPF  SS HFP+TRLDLF ++S  +  P  LLRP A  +     
Sbjct: 158 TNFRAMVQKFTGIPELPPFITSSHHFPKTRLDLFTSASTITFPPYNLLRPVAHNL----L 213

Query: 235 XXXXXXXXXXXXXXINYLXXXXXXXFPLNMQNN--TFQSI----VQAP-QKYSIGNSSLV 287
                         +++        + ++ QN   TF++I     Q P QKY +G SS +
Sbjct: 214 PPSSSIHNQFLSSSVDHFKQPLNNIYNMHSQNQAFTFRTIHDQTPQKPLQKYPLGYSSAL 273

Query: 288 SPKTQ-SSLEIPPATVDSHLKM-SVMEGLGLMSHAHVNTQIGSLHQNMVPSSSDEGALLS 345
             KTQ  SLEIPP+T DSHLKM +V+E LG++ H                   D   L+S
Sbjct: 274 VSKTQVPSLEIPPST-DSHLKMGNVLEELGILRH------------------DDRVNLMS 314

Query: 346 RINNIHNSSGNWAQRMGANAIANNDGDHH 374
                +N S  WA+R   + I NND   H
Sbjct: 315 S----NNGSKEWARRTHHDTINNNDSCDH 339


>Medtr5g063310.1 | VQ motif protein | HC | chr5:26258739-26256801 |
           20130731
          Length = 419

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 57/82 (69%), Gaps = 8/82 (9%)

Query: 156 RNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFSSSHFPRTRLDLFGASSAA- 214
           RN KKR+RASRRAPTTVLTTDT+NFRAMVQEFTGIPAPPFS S + R    L  +SS   
Sbjct: 152 RNSKKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPFSGSSYSRRLDLLTSSSSLRS 211

Query: 215 -------SSTPPYLLRPFAQKI 229
                  +S+  Y LRP  QK+
Sbjct: 212 NNSSHFDTSSSFYPLRPSPQKL 233


>Medtr2g035850.1 | VQ motif protein | HC | chr2:15214004-15215247 |
           20130731
          Length = 237

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 159 KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIP 191
           ++RSRAS+R PTT+L  +TTNFR +VQ+FTG P
Sbjct: 77  RRRSRASKRTPTTLLNANTTNFRQLVQQFTGCP 109