Miyakogusa Predicted Gene

Lj0g3v0276059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276059.1 tr|G7IIZ6|G7IIZ6_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_2g06,38.69,0.0000000002,Surp module (SWAP domain),SWAP/Surp;
seg,NULL; Surp,SWAP/Surp; ZF_C3H1,Zinc finger, CCCH-type;
SURP,,CUFF.18365.1
         (859 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g060650.1 | hypothetical protein | HC | chr2:25717287-2572...   337   4e-92
Medtr2g061440.1 | hypothetical protein | LC | chr2:26045101-2604...    64   9e-10

>Medtr2g060650.1 | hypothetical protein | HC |
           chr2:25717287-25726020 | 20130731
          Length = 1448

 Score =  337 bits (863), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 190/340 (55%), Positives = 236/340 (69%), Gaps = 19/340 (5%)

Query: 414 TVNADSDMEMEDDITLSDKDQGSNYAIEAFTKPHDQVNIVFSIDK--QQQQNSTENDPTK 471
           TV+ DSDMEMEDDITLSDKDQGS YA E  T+ HD+V+ VFS+++   Q QN  E +P K
Sbjct: 234 TVSTDSDMEMEDDITLSDKDQGSIYATEVVTRQHDRVDEVFSMNENIHQLQNPNETEPAK 293

Query: 472 DILSDGSRLLSD----------------EHMKPAKSVTKVSSLVNETTEVVECPLGSVLE 515
            ILS G+                     + MK A+SVTKV S VN++ E+ E  LG+   
Sbjct: 294 IILSSGASCFGSTGVGKQNEGPGPSADVDPMKSARSVTKVHSPVNDSIELSESLLGTGSG 353

Query: 516 RSSTPVSIDFIQNGTSDHDEATNPVRDSGKLIRSGSPIRLLQDYASDGTSDNEDEVCAAD 575
           R +  +  DFI+NGTSDH+EATNP RDS + ++ GSPIRLLQDYASD TSDNEDE C  D
Sbjct: 354 RLAASLDKDFIRNGTSDHNEATNPNRDSEQPMQIGSPIRLLQDYASDETSDNEDEGCTKD 413

Query: 576 AN-VFTVSSGADTGVSAAHKDSNSYLETDIGSKSPSNTQTELEMLSKTTQNDSEISPHLV 634
           A+ VFTVS+GA  GV  AHKD  S LET IG +SPS +Q E+  LS T+QN+S+ISP LV
Sbjct: 414 ASSVFTVSAGAGPGVPEAHKDCESNLETGIGFRSPSYSQKEIGQLSNTSQNNSKISPCLV 473

Query: 635 QESKGTCKGSVSSSNHGCIEHNLENQVSAHFTRSTEAFQVKDGLSGTGIDSDHKGGYAEQ 694
           QES+ TCK SVS +  GC+E NLENQVS +   + EAFQ KDGL  T  D D K G AEQ
Sbjct: 474 QESEETCKRSVSLTGDGCVEPNLENQVSVNLASTVEAFQGKDGLGDTSFDIDSKSGAAEQ 533

Query: 695 ENERKNPKIKPTVMKVDKFGRHLKEGATDSDSDDSYNHQT 734
           + E++  K +PTV+KVD+FGRH+KEG+TDS SD+S +H+T
Sbjct: 534 KREKETTKFEPTVLKVDEFGRHIKEGSTDSGSDESRSHRT 573



 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 53/64 (82%)

Query: 795 GDFRGENVRREKGQCFNFLRGKCYRGASCRYSHHEPEKNATSRRNRNKHDLEVYSHEKVS 854
           GD  GEN RR+K QCF+FLR KCYRGA CR+SHHE +KNATSRR+RNKHD E+YS EK S
Sbjct: 635 GDVHGENARRDKAQCFDFLRRKCYRGALCRFSHHESDKNATSRRSRNKHDAELYSREKSS 694

Query: 855 RKNE 858
           R NE
Sbjct: 695 RINE 698



 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 50/81 (61%), Gaps = 9/81 (11%)

Query: 245 TDDLNCLKVSGSESKDMDSVDRVVAPCPSGTVPLCNSDANQGGGSCREVA-VAGRDELLS 303
           TD LN        SK +DSVD  VA CPS   P+ NSDANQ GG+C EVA V+ R ELL 
Sbjct: 163 TDGLNS-------SKGVDSVDGFVASCPSDIAPVHNSDANQDGGNCDEVAPVSLRYELLP 215

Query: 304 TRSVILNLPPAPTKPTDEKTV 324
           T S +++L P P +  +E TV
Sbjct: 216 T-SNVMDLQPPPPQTAEETTV 235


>Medtr2g061440.1 | hypothetical protein | LC |
           chr2:26045101-26040196 | 20130731
          Length = 602

 Score = 63.5 bits (153), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 259 KDMDSVDRVVAPCPSGTVPLCNSDANQGGGSC-REVAVAGRDELLSTRSVILNLPPAPTK 317
           K +DSVD  +A CPS   P+ NSDANQ GG+C R V V+ R+ LL +RSV +NLPP   +
Sbjct: 75  KGVDSVDGFIASCPSDIAPVHNSDANQDGGNCGRVVPVSLREGLLPSRSV-MNLPPPLPQ 133

Query: 318 PTDEKTV 324
             +E TV
Sbjct: 134 TAEENTV 140