Miyakogusa Predicted Gene

Lj0g3v0276039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276039.1 Non Characterized Hit- tr|I1J4E4|I1J4E4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18187
PE,88.53,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Mnd1,Meiotic nuclear division protein 1; coiled-coi,CUFF.18308.1
         (218 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g090585.1 | meiotic nuclear division-like protein | HC | c...   389   e-108
Medtr6g090585.2 | meiotic nuclear division-like protein | HC | c...   324   4e-89

>Medtr6g090585.1 | meiotic nuclear division-like protein | HC |
           chr6:34432157-34427541 | 20130731
          Length = 218

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/218 (83%), Positives = 203/218 (93%)

Query: 1   MSKKRGLSLEEKREKMLQIFYESQDFYLLKELEKMGPRKGVIAQSVKDVIQSLVDDDLVS 60
           MSKKRGLSLEEKREKMLQIFYESQDF+LLKELEKMGP+KGVI+QSVKDV+QSLVDDDLVS
Sbjct: 1   MSKKRGLSLEEKREKMLQIFYESQDFFLLKELEKMGPKKGVISQSVKDVVQSLVDDDLVS 60

Query: 61  KDKIGTSVYFWSLPSCAGNQLRNVTCKLDSELQGSKNRHSQLVEQCETLKKGREESDERE 120
           KDKIGTSVYFWSLPSCAGNQLRNV  KLDSELQ S  RH+QLVEQCE LKKGREESDERE
Sbjct: 61  KDKIGTSVYFWSLPSCAGNQLRNVHQKLDSELQNSGTRHAQLVEQCEALKKGREESDERE 120

Query: 121 VALADLKAIELKHKELKDELAKFRDNDPAAFEAMKDAIGVAHASANRWTDNIFTLKQWCT 180
            ALADLKAI+LKH ELK+EL K+RDNDPAAFEAM++AI VAH +ANRWTDNIFTLKQWC+
Sbjct: 121 AALADLKAIQLKHNELKNELEKYRDNDPAAFEAMREAIEVAHTAANRWTDNIFTLKQWCS 180

Query: 181 NNFPQAKEQLENLYKEVGITDDFDYLELAPVLLKAVAD 218
           NNFPQAKEQL+++Y+E+GITD+FDYLE+ P+  K VAD
Sbjct: 181 NNFPQAKEQLQSMYQEIGITDEFDYLEMTPLPSKVVAD 218


>Medtr6g090585.2 | meiotic nuclear division-like protein | HC |
           chr6:34430173-34427541 | 20130731
          Length = 184

 Score =  324 bits (830), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 150/184 (81%), Positives = 169/184 (91%)

Query: 35  MGPRKGVIAQSVKDVIQSLVDDDLVSKDKIGTSVYFWSLPSCAGNQLRNVTCKLDSELQG 94
           MGP+KGVI+QSVKDV+QSLVDDDLVSKDKIGTSVYFWSLPSCAGNQLRNV  KLDSELQ 
Sbjct: 1   MGPKKGVISQSVKDVVQSLVDDDLVSKDKIGTSVYFWSLPSCAGNQLRNVHQKLDSELQN 60

Query: 95  SKNRHSQLVEQCETLKKGREESDEREVALADLKAIELKHKELKDELAKFRDNDPAAFEAM 154
           S  RH+QLVEQCE LKKGREESDERE ALADLKAI+LKH ELK+EL K+RDNDPAAFEAM
Sbjct: 61  SGTRHAQLVEQCEALKKGREESDEREAALADLKAIQLKHNELKNELEKYRDNDPAAFEAM 120

Query: 155 KDAIGVAHASANRWTDNIFTLKQWCTNNFPQAKEQLENLYKEVGITDDFDYLELAPVLLK 214
           ++AI VAH +ANRWTDNIFTLKQWC+NNFPQAKEQL+++Y+E+GITD+FDYLE+ P+  K
Sbjct: 121 REAIEVAHTAANRWTDNIFTLKQWCSNNFPQAKEQLQSMYQEIGITDEFDYLEMTPLPSK 180

Query: 215 AVAD 218
            VAD
Sbjct: 181 VVAD 184