Miyakogusa Predicted Gene

Lj0g3v0275659.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275659.2 Non Characterized Hit- tr|Q69KN1|Q69KN1_ORYSJ
Putative SMA-9 class B OS=Oryza sativa subsp.
japonica,27.41,0.000004,seg,NULL,CUFF.18278.2
         (465 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g085130.1 | hypothetical protein | LC | chr6:32102407-3209...   172   6e-43
Medtr6g085080.1 | mediator complex subunit 25 von willebrand fac...   163   3e-40
Medtr6g085100.1 | mediator complex subunit 25 von willebrand fac...   158   9e-39
Medtr5g054680.1 | phytochrome and flowering time regulatory prot...    57   5e-08
Medtr1g013000.1 | mediator of RNA polymerase II transcription su...    52   1e-06

>Medtr6g085130.1 | hypothetical protein | LC |
           chr6:32102407-32098176 | 20130731
          Length = 624

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 234/496 (47%), Gaps = 83/496 (16%)

Query: 2   GDQITEDP--NALRNESPLVFPNATNYMHASSPSFEYPMNHFDDIVPDLGAENDFLRASK 59
           G+ IT +P   +  N   LV   AT+  +         MN ++DI+ +L  ++D    +K
Sbjct: 176 GNTITPEPVSTSQHNSQELVLSKATDQENVVQ------MNLYEDIMSELDRDDDLFTPNK 229

Query: 60  KPKTFTALEDGIP-ENLFHQDE--------------LNSTVINNSVREEQRMHTEKNVPV 104
           + KTF  LED    ++ F  DE                       +  E+ +  ++ +P 
Sbjct: 230 RSKTFAPLEDDADLKDFFKFDENTFFDGFDQFLEQQDQQVSNQQQIPTEEAVFNQQQIPT 289

Query: 105 E-AIETVETELEPTLRVVSQNISNNQTSNMDLTANS--EVNMSGQVVANAEPTFTTEQGS 161
           E A      EL+  L   S+N S  QT+N++ T +S  EVN   + VA   P     +GS
Sbjct: 290 EEAGVDFANELQEILNGASRNTSTAQTANVECTTSSFQEVN---KYVA---PASNAGEGS 343

Query: 162 STRLLQTLTPRRDKN----TKNHVISSKNYSTSAFSVPQYXXXXXXXWTDQGPMQQACHP 217
           ST LL     +   N    T    + S+++ T+AF+                        
Sbjct: 344 STGLLHESNLQSWYNPHAMTSTSKLDSQSFPTNAFNG----------------------- 380

Query: 218 QLGMTSISSRLGIVDQDDPRQFHYDASFGSSMIPSAVENSPMQ-FQPNSAPVVPVLHDAT 276
              MTS S+        D + F  +A  G+    +A+ NS MQ  QP S+         +
Sbjct: 381 --NMTSKSTF-------DSQSFPTNAFNGNFTFSNAMGNSQMQQLQPGSSQNQ---FSMS 428

Query: 277 SQYVRGPMGNFSGKP--------TEHVTMTSYGPLNTPPMGPTTSVPPMPGMAPTIYXXX 328
             + RG +GNFSG+P         + +   +    N P  G  T + PMP ++P+ Y   
Sbjct: 429 PGFARGQIGNFSGQPMGQHFQAYNQFLRNNNTAAYNLPAFGANTWLRPMPSLSPS-YPSA 487

Query: 329 XXXXXXXXXXXXYVQTWEGSLAAKFQPNHVSLIKAQAFSKATPPFSLTLQWSSRLEISNF 388
                       YVQTWEG+LA K   + +++++A+AF K+  P +LTL W  RLEIS++
Sbjct: 488 SMYFPTLEEIQDYVQTWEGTLAGKITSSRMTILRAKAFRKSNTPLTLTLGWPGRLEISHY 547

Query: 389 LPEKAVNYTKCSLSRPVYYVFLNTLSKSN-KLYEHLLSKKLCAKIDFSHQSLILSPTEKK 447
             ++ +N+T+   ++P++Y+F +    +N  LY+HL +  LCAK+D   QS+ILSPTE++
Sbjct: 548 FHQRTLNHTR-RFTQPIHYLFFHVAKYNNVDLYKHLKTSYLCAKVDLQFQSIILSPTERE 606

Query: 448 YFFLGSVFPRGTTFVE 463
             F+G+VFP GT F+E
Sbjct: 607 PLFVGTVFPGGTLFIE 622


>Medtr6g085080.1 | mediator complex subunit 25 von willebrand factor
           type A protein | LC | chr6:32077390-32069017 | 20130731
          Length = 713

 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 220/449 (48%), Gaps = 74/449 (16%)

Query: 38  MNHFDDIVPDLGAENDFLRASKKPKTFTALEDGIP-ENLFHQDELNSTVINNSVREEQRM 96
           MN ++DI+ +L  ++D    +K+ KTF  LED    ++ F  D+      +  ++++Q++
Sbjct: 303 MNLYEDIMSELD-DDDLFTPNKRSKTFAPLEDDPDLQDFFKFDQNPFEGFDQFIKQDQQV 361

Query: 97  HTEKNVPVEA-------IETVET------ELEPTLRVVSQNISNNQTSNMDLTANS--EV 141
             ++ +P E        I T E       EL+  L   S+N S  QT+N++ T +S  EV
Sbjct: 362 FNQQEIPTEEAVFNQQQIPTEEAGVDFANELQEILNGASRNTSTAQTANVECTTSSFQEV 421

Query: 142 NMSGQVVANAEPTFTTEQGSSTRLLQTLTPRRDKN----TKNHVISSKNYSTSAFSVPQY 197
           N   + VA   P     +GSST LL     +   N    T    + S+++ T+AF+    
Sbjct: 422 N---KYVA---PASNVGEGSSTGLLHESNLQSWYNPHAMTSTSKLDSQSFPTNAFNG--- 472

Query: 198 XXXXXXXWTDQGPMQQACHPQLGMTSISSRLGIVDQDDPRQFHYDASFGSSMIPSAVENS 257
                                  MTS S+        D R F  +   G+  + + + NS
Sbjct: 473 ----------------------NMTSTSTL-------DSRSFSTNNFNGNFTLSNVMGNS 503

Query: 258 PMQ-FQPNSAPVVPVLHDATSQYVRGPMGNFSGKP--------TEHVTMTSYGPLNTPPM 308
            MQ  QP S+         +  + RG +GNFS +P         + +   +    N P  
Sbjct: 504 QMQQLQPGSSQNQ---FSMSPGFARGQVGNFSVQPMGQHFQACNQFLRNNNTASYNLPAF 560

Query: 309 GPTTSVPPMPGMAPTIYXXXXXXXXXXXXXXXYVQTWEGSLAAKFQPNHVSLIKAQAFSK 368
           G  T + PMP ++P+ Y               YVQTWEG+LA K   + +++++A+AF K
Sbjct: 561 GANTWLRPMPSLSPS-YPSASMCFPTLKEIQDYVQTWEGTLAGKITSSRITILRAKAFRK 619

Query: 369 ATPPFSLTLQWSSRLEISNFLPEKAVNYTKCSLSRPVYYVFLNTLSKSN-KLYEHLLSKK 427
           ++ P +LTL W  RLEISN+LP+KA+ +T+   S+P++Y+F +    SN  LY H  ++ 
Sbjct: 620 SSTPPTLTLDWPGRLEISNYLPQKALLHTR-RFSQPIHYLFFHVAKYSNVDLYNHCKTRN 678

Query: 428 LCAKIDFSHQSLILSPTEKKYFFLGSVFP 456
            CAK+D   Q++ILSPTE++  F+G+VFP
Sbjct: 679 NCAKVDLQFQTIILSPTEREPLFVGTVFP 707


>Medtr6g085100.1 | mediator complex subunit 25 von willebrand factor
           type A protein | LC | chr6:32089756-32081059 | 20130731
          Length = 752

 Score =  158 bits (400), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 147/496 (29%), Positives = 229/496 (46%), Gaps = 65/496 (13%)

Query: 1   MGDQITEDPNAL---------RNESPLVFPNATNYMHASSPSFEYPMNHFDDIVPDLGAE 51
           +GD+I E  NA+          N   LV   AT+  +         MN ++DI+ +L ++
Sbjct: 273 IGDRIHETGNAITPEPVSTSQHNSQELVVSKATDQENI------VQMNLYEDIMSELDSD 326

Query: 52  NDFLRASKKPKTFTALEDGIPENLFHQDELNSTVIN-NSVREEQRMHTEKNVPV---EAI 107
           +D  + +K+ KTF  LED      F + + N+     +   E+Q         +   EA 
Sbjct: 327 DDLFKPNKRSKTFAPLEDDADLQDFFKFDQNTFFDGFDQFLEQQDQQVMNQQQIPTEEAG 386

Query: 108 ETVETELEPTLRVVSQNISNNQTSNMDLTANS--EVNMSGQVVANAEPTFTTEQGSSTRL 165
                EL+  L   S+N S  QT+N++ T +S  EVN+  + +    P     +GSST L
Sbjct: 387 VDFAKELQEILNGASRNTSTAQTANVECTTSSFQEVNVQPEELRAPAPN--AGEGSSTGL 444

Query: 166 LQTLTPRRDKN----TKNHVISSKNYSTSAFSVPQYXXXXXXXWTDQGPMQQACHPQLGM 221
           L     +   N    T    + S+++ T+AF+            T      Q  +    M
Sbjct: 445 LHESNLQLWYNPHAMTSTSTLDSQSFPTNAFN-----GNMTSISTLDSQSSQTNNFNRNM 499

Query: 222 TSISSRLGIVDQDDPRQFHYDASFGSSMIPSAVENSPMQFQPNSAPVVPV-LHDATSQYV 280
           TS S+        D + F  +A  G+    + + NS MQ QP   PV           + 
Sbjct: 500 TSTSTL-------DSQSFPTNAFNGNFTFSNVMANSQMQ-QPQ--PVSSQNQFSGFPGFA 549

Query: 281 RGPMGNFSGKPTEHVTMTSYGPL-------------------NTPPMGPTTSVPPMPGMA 321
           RG +GNFSG+P       S  P+                   N P  G  T + PM  ++
Sbjct: 550 RGQIGNFSGQPVGQTGNFSGQPVGQHFQAYNHFLRNNNTAAYNLPAFGANTWLRPMQSLS 609

Query: 322 PTIYXXXXXXXXXXXXXXXYVQTWEGSLAAKFQPNHVSLIKAQAFSKATPPFSLTLQWSS 381
           P+ Y               YVQTWEG+LA K   +  ++++A+AF K++ P +LTL W  
Sbjct: 610 PS-YPSARMHFPTLEEIQDYVQTWEGTLAGKITSSRTTILRAKAFKKSSTPPTLTLGWPG 668

Query: 382 RLEISNFLPEKAVNYTKCSLSRPVYYVFLNTLSKSN-KLYEHLLSKKLCAKIDFSHQSLI 440
           RLEISN+LP+KA+ +T+   S+P++Y+F +     N  LY H  ++  CAK+D   Q++I
Sbjct: 669 RLEISNYLPQKALLHTR-RFSQPIHYLFFHVAKYGNVDLYNHCKTRNNCAKVDLQFQTII 727

Query: 441 LSPTEKKYFFLGSVFP 456
           LSPTE++  F+G+VFP
Sbjct: 728 LSPTEREPLFVGTVFP 743


>Medtr5g054680.1 | phytochrome and flowering time regulatory protein
           | HC | chr5:22512525-22526575 | 20130731
          Length = 820

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 341 YVQTWEGSLAAKFQPNHVSLIKAQAFSKATPPFSLTLQWSSRLEISNFLPEKAVNYTKCS 400
           Y++ WEGSL+ + Q   V + K + +  ++   +L   W   ++I   + +  +N  K  
Sbjct: 554 YIKVWEGSLSGQRQGQPVFITKLEGYRSSSASETLAANWPPVMQIVRLISQDHMN-NKQY 612

Query: 401 LSRPVYYVFLNTLSKSNKLYEHLLSKKLCAKIDFSHQSLILSPTEKKYFFLGSVFPRGTT 460
           + +  + VF       +     L  KKLCA I    Q+L+LS ++K    +G +FP    
Sbjct: 613 VGKADFLVF--RAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMV 670

Query: 461 FVEPR 465
             +P+
Sbjct: 671 VFKPQ 675


>Medtr1g013000.1 | mediator of RNA polymerase II transcription
           subunit 25 | LC | chr1:2786873-2785071 | 20130731
          Length = 600

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 341 YVQTWEGSLAAKFQPNHVSLIKAQAFSKATPPFSLTLQWSSRLEISNFLPEKAVNYTKCS 400
           Y++ WEG+L    Q   V + K + +   +   +LT  W + ++I   + +  +N  K  
Sbjct: 392 YIKAWEGTLTGLRQGQPVFISKLEGYRSFSASETLTADWPAGMQIGRLISQDHMN-NKQY 450

Query: 401 LSRPVYYVFLNTLSKSNKLYEHLLSKKLCAKIDFSHQSLILSPTEKKYFFLGSVFPR 457
           + +  + VF       +     L  KK CA I    Q+L++S ++K    +G +FP+
Sbjct: 451 IGKADFLVFRAM--NQHGFLGQLKEKKQCAVIQLPSQTLLMSVSDKPCRLIGMIFPK 505