Miyakogusa Predicted Gene

Lj0g3v0275509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275509.1 Non Characterized Hit- tr|A5APB2|A5APB2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,70.59,0.0000000000008,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,Rab3 GTPase-activating protein catalytic subunit;
Rab3-GT,CUFF.18283.1
         (376 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g465600.1 | Rab3 GTPase-activating protein catalytic subun...   670   0.0  
Medtr5g093230.1 | Rab3 GTPase-activating protein catalytic subun...   119   4e-27
Medtr3g052790.1 | Rab3 GTPase-activating protein catalytic subun...   112   8e-25

>Medtr3g465600.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr3:26564199-26578240 | 20130731
          Length = 952

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/377 (85%), Positives = 347/377 (92%), Gaps = 2/377 (0%)

Query: 1   MMLLKSYQSMHAPYTQEAPLMTEDMHEERLQAVEAFGDSFNFSAQLERDILNSDMSSFKA 60
           MMLLKSYQSMHAPYTQE PLMTEDMHEER+QAVEA GDSFNFSAQLE+DIL SDMS+FKA
Sbjct: 577 MMLLKSYQSMHAPYTQEPPLMTEDMHEERMQAVEAIGDSFNFSAQLEKDILTSDMSAFKA 636

Query: 61  ANPDATFEDFIRWHSPGDWEADNDSEVAGXXXXXALDINKSKDDWPPRGRLSKRMSEHGN 120
           ANPDA FEDFIRWHSPGDWEAD+D E +G     AL+INKSKD WPPRG+LSKRMSEHGN
Sbjct: 637 ANPDAIFEDFIRWHSPGDWEADDDPESSGSASSNALEINKSKDSWPPRGKLSKRMSEHGN 696

Query: 121 LWRKIWDSAPSLPASEQKPLLDPNREGEKVLHYLETLQPHVLLEQMVCTAFRAAADTLSQ 180
           +WRKIW S+P+LPASEQKPLLDPNREGEKVLHYLETL+PH LLEQMV TAFRAAADTLSQ
Sbjct: 697 MWRKIWSSSPALPASEQKPLLDPNREGEKVLHYLETLRPHQLLEQMVSTAFRAAADTLSQ 756

Query: 181 TSYGELKQMDTKMQQLYLTIAPALRPLQVNRLSADSETIEDLRRLSVVFENVEKLLTLAA 240
           TSYGELKQM+TK+QQLY T+A ALRPLQVNRLSADSETIED RRL VVFE VEKLLT+AA
Sbjct: 757 TSYGELKQMETKIQQLYPTMASALRPLQVNRLSADSETIEDFRRLCVVFERVEKLLTVAA 816

Query: 241 SLHRKLVRAPRLSRDIFSDYYSFYIPTMGTGLSED-IEKEFDKKQVVKDREREVLSNMFV 299
           SLHRKL+RAPRLSR+IF+DYY+FYIPTMGT L E+ +EKEFDKKQ V++ EREVLSNMFV
Sbjct: 817 SLHRKLIRAPRLSREIFNDYYNFYIPTMGTSLIEEVVEKEFDKKQEVRNHEREVLSNMFV 876

Query: 300 PPTANQSWRKVLSMGNLLNGHEPILREIIFSLRDRWNGNHYAARGGSVSQQEIETYRMYI 359
           PPTANQSWRKVLSMGNLLNGHEPILREIIFSL DR +GNHYAAR GSVS QEIETYRMYI
Sbjct: 877 PPTANQSWRKVLSMGNLLNGHEPILREIIFSLHDRVSGNHYAARSGSVS-QEIETYRMYI 935

Query: 360 CGTSNALRVALSVVSCD 376
           CGTSN LRVALSVVSCD
Sbjct: 936 CGTSNDLRVALSVVSCD 952


>Medtr5g093230.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr5:40696171-40704190 | 20130731
          Length = 692

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 43/267 (16%)

Query: 1   MMLLKSYQSMHAPYTQEAPLMTEDMHEERLQAVEAFGDSFNFSAQLERDILNSDMSSFKA 60
           + LL++ + +++P TQE PL+TED+  E  + V   G      +QL      SDM +FKA
Sbjct: 382 LTLLETGEPVYSPVTQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLL-----SDMQAFKA 436

Query: 61  ANPDATFEDFIRWHSPGDWEADNDSEVAGXXXXXALDINKSKDDWPPRGRLSKRMSEHGN 120
           ANP    EDF+RWHSP DW  DN++ +         D+  S +    +G+LS+RM + GN
Sbjct: 437 ANPGCILEDFVRWHSPPDW-TDNEASIEDS------DVFDSGESLSSKGQLSRRMQKEGN 489

Query: 121 LWRKIWDSAPSLPASEQKPLLDPNREGEKVLHYLETLQPHVLLEQMVCT----AFRAAAD 176
           LW ++W ++  +PA +Q PL D +   E +LH  E + P  L  Q+  +     F  A  
Sbjct: 490 LWHELWATSKPVPAVKQAPLFDEDLAVEGILHAFEDIHPFELFGQLFVSLLGLGFAIAEP 549

Query: 177 TLSQTSYGELKQMDTK------------------MQQLYLTIAPAL----RPLQVNRLSA 214
            LS +        D K                  + Q+Y T+   L      L++ + S 
Sbjct: 550 MLSSSKDFSKLFCDCKEYIVATCQSNKWSEKVDDLVQVYETVETMLMNPEEALKMIKQSE 609

Query: 215 DSETIED-----LRRLSVVFENVEKLL 236
           +S T+ D      +RLS++F   +K+L
Sbjct: 610 ESITVTDEPKSRFKRLSLIFSGKDKVL 636


>Medtr3g052790.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr3:20895915-20902043 | 20130731
          Length = 704

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 17/227 (7%)

Query: 1   MMLLKSYQSMHAPYTQEAPLMTEDMHEERLQAVEAFGDSFNFSAQLERDILNSDMSSFKA 60
           + LL++ +  ++P TQEAPL+TED+ +E  + +   G   +F A   +  L SDM +FKA
Sbjct: 391 LTLLETGEPAYSPITQEAPLLTEDLIKETEELILQTG---SFGAGCSQ--LLSDMQAFKA 445

Query: 61  ANPDATFEDFIRWHSPGDWEADNDSEVAGXXXXXALDINKSKDDWPPRGRLSKRMSEHGN 120
           ANP    EDF+RW+SP DW     +E+               D    RG LS+RM + GN
Sbjct: 446 ANPGCILEDFVRWYSPPDW-----TEIEASTEDSCSSDGSGSDSSSNRGHLSRRMRKEGN 500

Query: 121 LWRKIWDSAPSLPASEQKPLLDPNREGEKVLHYLETLQPHVLLEQMVCT----AFRAAAD 176
           LWR++W+++  +PA +Q PL D +   E +L   + +QP  L  Q+  +     F  A  
Sbjct: 501 LWRELWETSKPVPAVKQAPLFDEDLTVEGILDAFKDIQPVELFGQLFVSLLGLGFTIAEP 560

Query: 177 TLSQTSYGELKQMDTKMQQLYLTIAPALR-PLQVNRLSADSETIEDL 222
            LS     +  ++    ++  +T   ++R   +++ L    ET+E L
Sbjct: 561 LLSGND--DFSKLFNDCKEFVVTTCQSIRFGEKIDELVQVYETVETL 605