Miyakogusa Predicted Gene

Lj0g3v0275279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275279.1 tr|E4MWC7|E4MWC7_THEHA mRNA, clone: RTFL01-07-P23
OS=Thellungiella halophila PE=2 SV=1,30.84,9e-17,seg,NULL,CUFF.18241.1
         (275 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g094470.1 | transmembrane protein, putative | HC | chr7:37...   266   1e-71
Medtr1g089980.1 | hypothetical protein | HC | chr1:40300374-4029...   223   1e-58

>Medtr7g094470.1 | transmembrane protein, putative | HC |
           chr7:37605011-37600190 | 20130731
          Length = 417

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/262 (55%), Positives = 177/262 (67%), Gaps = 5/262 (1%)

Query: 1   MLQKLSLMASHGYPSGLLLHQELGLPGSYMKGCQTLLPSPVAKPDMIRYQSPCLKPNLCE 60
           M+Q+L  MASH YP GL+L Q+      Y    QT LPS +AKPD++ YQ P LKP+L  
Sbjct: 1   MVQRLCPMASHIYPPGLVLQQQQLHLKDY----QTFLPSSLAKPDVLSYQCPFLKPSLSA 56

Query: 61  ELTKIRSDCFDCNQFVNADFSTQRPVLLDVQAPCSEALLFGFGIVEKCTKHDQVLNFLMS 120
           E  + ++  FD NQFVN + S Q PV +D Q  CS A+L GFGIVE+CTKHD++   L S
Sbjct: 57  ESMETQNKWFDDNQFVNVNSSPQWPVSVDAQESCSNAVLLGFGIVEQCTKHDKISKHLKS 116

Query: 121 GTAETGIGGANXXXXXXXXXXXXXGMDDPQQPLAS-FIYPYSKFDIQKSLLYFAQDPALS 179
           GTAE+    AN             G+D+PQQP +S  +YP  KFDI+K LLYF QD A S
Sbjct: 117 GTAESRKDSANISLMLDLMKLQLSGIDEPQQPFSSSLLYPNDKFDIKKPLLYFLQDSAFS 176

Query: 180 SKITVLPDGQITFMGTGIEMKDLLSVVAESYLTKTLHKGEKHSVLVPHFIRVNINEAGSK 239
           SKITV  DGQITFMGT I+MKDLLSVVAESYL+K+LHK EKHS+LVP+F RV+INEA  +
Sbjct: 177 SKITVDLDGQITFMGTEIQMKDLLSVVAESYLSKSLHKVEKHSMLVPYFSRVDINEAEGQ 236

Query: 240 SHSSTSNFQSTLTAPSRRSARI 261
           S  ST   QSTL AP R   ++
Sbjct: 237 SRPSTVKMQSTLIAPLRSPKKV 258


>Medtr1g089980.1 | hypothetical protein | HC |
           chr1:40300374-40296904 | 20130731
          Length = 413

 Score =  223 bits (569), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/262 (46%), Positives = 159/262 (60%), Gaps = 11/262 (4%)

Query: 1   MLQKLSLMASHGYPSGLLLHQELGLPGSYMKGCQTLLPSPVAKPDMIRYQSPCLKPNLCE 60
           M QKL +MASHG+PS     QE       MKGCQ L+P    KPD++RYQSP L+ N  E
Sbjct: 2   MSQKLCVMASHGFPS-----QEYA-----MKGCQQLVPCYAPKPDIVRYQSPNLRLNSFE 51

Query: 61  ELTKIRS-DCFDCNQFVNADFSTQRPVLLDVQAPCSEALLFGFGIVEKCTKHDQVLNFLM 119
           E     S + F+ NQFV+ D S  +P+++DVQA C   +LF FG+V +CT+HD+    + 
Sbjct: 52  ESRMTTSKEWFNSNQFVDFDLSALKPMVIDVQATCPSTVLFSFGVVGQCTEHDKTSLCIT 111

Query: 120 SGTAETGIGGANXXXXXXXXXXXXXGMDDPQQPLASFIYPYSKFDIQKSLLYFAQDPALS 179
           S TAE  + G               G++ PQ  L   IYP   F I K LL   QD ALS
Sbjct: 112 SETAEAVVDGVRKALLSDLMGLQLSGINIPQMSLHPLIYPNRTFYISKPLLDIFQDSALS 171

Query: 180 SKITVLPDGQITFMGTGIEMKDLLSVVAESYLTKTLHKGEKHSVLVPHFIRVNINEAGSK 239
           SK TV  +GQ+TFMGT IEMKD L++VAESY++K  H GEK S+LVPHF R+NINE  ++
Sbjct: 172 SKFTVHLNGQVTFMGTEIEMKDFLAIVAESYVSKRTHNGEKQSMLVPHFSRLNINEVEAR 231

Query: 240 SHSSTSNFQSTLTAPSRRSARI 261
           S S T +  STLT P +   ++
Sbjct: 232 SISPTLDIHSTLTVPLKSPEKV 253