Miyakogusa Predicted Gene

Lj0g3v0275139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275139.1 Non Characterized Hit- tr|I1MZC4|I1MZC4_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,58.54,2e-17,seg,NULL; XH,Uncharacterised domain XH; TRANSCRIPTION
FACTOR X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SU,gene.g21395.t1.1
         (307 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g067815.1 | XH/XS domain protein | HC | chr3:30442774-3045...    89   8e-18
Medtr3g067815.2 | XH/XS domain protein | HC | chr3:30442712-3045...    89   8e-18
Medtr5g079940.2 | XH/XS domain protein | HC | chr5:34197983-3420...    83   4e-16
Medtr5g079940.1 | XH/XS domain protein | HC | chr5:34197952-3420...    83   4e-16
Medtr3g067855.1 | XH/XS domain protein | LC | chr3:30473571-3047...    74   1e-13
Medtr4g126200.1 | XH/XS domain protein | HC | chr4:52481073-5248...    74   2e-13
Medtr2g097010.1 | XH/XS domain protein | HC | chr2:41475531-4147...    72   9e-13
Medtr3g067825.1 | XH/XS domain protein | HC | chr3:30455863-3045...    70   2e-12
Medtr2g097020.1 | XH/XS domain protein | HC | chr2:41482585-4148...    70   3e-12
Medtr2g097000.1 | XH/XS domain protein | HC | chr2:41469407-4147...    69   5e-12
Medtr4g006760.1 | XH/XS domain protein | HC | chr4:797451-803235...    64   1e-10
Medtr4g046643.1 | XH/XS domain protein | HC | chr4:16410194-1640...    62   6e-10
Medtr4g125920.1 | XH/XS domain protein | HC | chr4:52281801-5228...    62   7e-10
Medtr4g131350.1 | XH/XS domain protein | HC | chr4:54788977-5479...    61   1e-09
Medtr4g131310.1 | XH/XS domain protein | HC | chr4:54778297-5477...    61   1e-09
Medtr3g067845.1 | XH/XS domain protein | LC | chr3:30465601-3046...    56   4e-08

>Medtr3g067815.1 | XH/XS domain protein | HC |
           chr3:30442774-30450725 | 20130731
          Length = 640

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 207 EEEIV-CDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
           E+EI+  DDEKL  LRKEV  +A  AVV +  E+N++NPSGR+V SELWN+   R+ATL+
Sbjct: 563 EKEIIKDDDEKLNGLRKEVGEKAYSAVVASLTEINEYNPSGRYVTSELWNYKAGRRATLQ 622

Query: 266 EGVEFLLSQWKTKKRKI 282
           EGV+FLL  WK KK+ +
Sbjct: 623 EGVKFLLDYWKRKKKGM 639



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 56/250 (22%)

Query: 4   ETPASKQSKAVASLQNSIEHQKHKITDVELKHSTEKVASLSKLKEISDMLIKFTNKE-ST 62
           E  A +Q K V++L N I+ +   + ++E +  TE  A ++      D LI+  N+E   
Sbjct: 253 EEEARRQDKLVSNLTNIIQVKNKHLHEIEAR-CTETTAKMNSAMTEKDQLIQAYNEEIKK 311

Query: 63  LHVDCQKELQQMKVVNSSMSNDMECIKKEVEQMXXXXXXXXXXXXXXXXXXXXXXDSKYL 122
           +    +   Q++   +  + + +E  K E+E                          K L
Sbjct: 312 IQSSAKDHFQRIFNDHEKLKSQLETQKSELESRRITLEKREAHNESERR--------KLL 363

Query: 123 NDLQQKSFNEEIRKLAAMKQQNEHKSVLKLVEDLKDKNEKLNAKIVELEKPPNL------ 176
            ++++ +      ++A+++QQ    +V+KL ED K + E+L+AKI++LE+  ++      
Sbjct: 364 EEMEENATRNSSLQMASLEQQKADINVMKLAEDQKKQKEQLHAKIIQLERQLDMKQKLEL 423

Query: 177 ----------------------------------------LQESEDFNQSLIIKERESND 196
                                                   LQ+ +  NQ+LIIKER+SND
Sbjct: 424 EIQQLKGSLSVLKHIEDDEDVEVLKKVDDLHMGLREKEQSLQDLDALNQTLIIKERKSND 483

Query: 197 ELQKARKRMI 206
           ELQ ARK +I
Sbjct: 484 ELQDARKELI 493


>Medtr3g067815.2 | XH/XS domain protein | HC |
           chr3:30442712-30450961 | 20130731
          Length = 640

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 207 EEEIV-CDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLE 265
           E+EI+  DDEKL  LRKEV  +A  AVV +  E+N++NPSGR+V SELWN+   R+ATL+
Sbjct: 563 EKEIIKDDDEKLNGLRKEVGEKAYSAVVASLTEINEYNPSGRYVTSELWNYKAGRRATLQ 622

Query: 266 EGVEFLLSQWKTKKRKI 282
           EGV+FLL  WK KK+ +
Sbjct: 623 EGVKFLLDYWKRKKKGM 639



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 56/250 (22%)

Query: 4   ETPASKQSKAVASLQNSIEHQKHKITDVELKHSTEKVASLSKLKEISDMLIKFTNKE-ST 62
           E  A +Q K V++L N I+ +   + ++E +  TE  A ++      D LI+  N+E   
Sbjct: 253 EEEARRQDKLVSNLTNIIQVKNKHLHEIEAR-CTETTAKMNSAMTEKDQLIQAYNEEIKK 311

Query: 63  LHVDCQKELQQMKVVNSSMSNDMECIKKEVEQMXXXXXXXXXXXXXXXXXXXXXXDSKYL 122
           +    +   Q++   +  + + +E  K E+E                          K L
Sbjct: 312 IQSSAKDHFQRIFNDHEKLKSQLETQKSELESRRITLEKREAHNESERR--------KLL 363

Query: 123 NDLQQKSFNEEIRKLAAMKQQNEHKSVLKLVEDLKDKNEKLNAKIVELEKPPNL------ 176
            ++++ +      ++A+++QQ    +V+KL ED K + E+L+AKI++LE+  ++      
Sbjct: 364 EEMEENATRNSSLQMASLEQQKADINVMKLAEDQKKQKEQLHAKIIQLERQLDMKQKLEL 423

Query: 177 ----------------------------------------LQESEDFNQSLIIKERESND 196
                                                   LQ+ +  NQ+LIIKER+SND
Sbjct: 424 EIQQLKGSLSVLKHIEDDEDVEVLKKVDDLHMGLREKEQSLQDLDALNQTLIIKERKSND 483

Query: 197 ELQKARKRMI 206
           ELQ ARK +I
Sbjct: 484 ELQDARKELI 493


>Medtr5g079940.2 | XH/XS domain protein | HC | chr5:34197983-34205199
            | 20130731
          Length = 1122

 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 56/75 (74%)

Query: 207  EEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEE 266
            +E I  +DEKL +LR E+  E   AVV A KE+N++NPSGR++ SELWN+   ++ATL+E
Sbjct: 1044 QEAIDDEDEKLNELRNEMGEEVYKAVVAALKEINEYNPSGRYITSELWNYAEGKRATLQE 1103

Query: 267  GVEFLLSQWKTKKRK 281
            GV+ LL+QWK  ++K
Sbjct: 1104 GVKVLLNQWKLNRQK 1118



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 55/139 (39%)

Query: 123 NDLQQKSFNEEIRK---------LAAMKQQNEHKSVLKLVEDLKDKNEKLNAKIVELEKP 173
           N+ ++K  +EEI K         +AAM+QQ   ++VLKL  D K + E+L+AKI++LEK 
Sbjct: 835 NESERKKLDEEINKTATKNHFLQMAAMEQQKAGENVLKLAADQKRQKEQLHAKIIQLEKQ 894

Query: 174 PNL----------------------------------------------LQESEDFNQSL 187
            N+                                              L++ +  NQ+L
Sbjct: 895 LNVKQKLELEIQQLKGKLNVMKHMEDDGELDVLDMMDALHIDLREKEQSLRDMDALNQTL 954

Query: 188 IIKERESNDELQKARKRMI 206
           IIKER+SNDELQ+ARK +I
Sbjct: 955 IIKERKSNDELQEARKELI 973


>Medtr5g079940.1 | XH/XS domain protein | HC | chr5:34197952-34206055
            | 20130731
          Length = 1122

 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 56/75 (74%)

Query: 207  EEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEE 266
            +E I  +DEKL +LR E+  E   AVV A KE+N++NPSGR++ SELWN+   ++ATL+E
Sbjct: 1044 QEAIDDEDEKLNELRNEMGEEVYKAVVAALKEINEYNPSGRYITSELWNYAEGKRATLQE 1103

Query: 267  GVEFLLSQWKTKKRK 281
            GV+ LL+QWK  ++K
Sbjct: 1104 GVKVLLNQWKLNRQK 1118



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 55/139 (39%)

Query: 123 NDLQQKSFNEEIRK---------LAAMKQQNEHKSVLKLVEDLKDKNEKLNAKIVELEKP 173
           N+ ++K  +EEI K         +AAM+QQ   ++VLKL  D K + E+L+AKI++LEK 
Sbjct: 835 NESERKKLDEEINKTATKNHFLQMAAMEQQKAGENVLKLAADQKRQKEQLHAKIIQLEKQ 894

Query: 174 PNL----------------------------------------------LQESEDFNQSL 187
            N+                                              L++ +  NQ+L
Sbjct: 895 LNVKQKLELEIQQLKGKLNVMKHMEDDGELDVLDMMDALHIDLREKEQSLRDMDALNQTL 954

Query: 188 IIKERESNDELQKARKRMI 206
           IIKER+SNDELQ+ARK +I
Sbjct: 955 IIKERKSNDELQEARKELI 973


>Medtr3g067855.1 | XH/XS domain protein | LC |
           chr3:30473571-30475720 | 20130731
          Length = 362

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKL +L++ +      AVV A KEMN++NPSG + +SELWN+  KR+ATL+EG++FL 
Sbjct: 269 EDEKLNELKESIGEAVYDAVVVALKEMNEYNPSGGYPISELWNYSEKRRATLQEGIQFLA 328

Query: 273 -SQWKTKKRKIHQTGTDDGENA 293
            +Q   +KR   Q G  D E  
Sbjct: 329 NNQSNKRKRGRTQKGRPDAERG 350


>Medtr4g126200.1 | XH/XS domain protein | HC |
           chr4:52481073-52482426 | 20130731
          Length = 257

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 49/69 (71%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKLK L+ E   +   AVV A KE+N++NPSGR+ + ELWN    RKAT++EGV  L+
Sbjct: 182 EDEKLKSLKDEFGDKVHDAVVTALKELNEYNPSGRYSILELWNFKEGRKATVKEGVSHLI 241

Query: 273 SQWKTKKRK 281
            QWK+ KR+
Sbjct: 242 RQWKSAKRR 250


>Medtr2g097010.1 | XH/XS domain protein | HC |
           chr2:41475531-41479177 | 20130731
          Length = 678

 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 45/69 (65%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKLK L+ E   E   AV  A KE+N+ NPSGR+ + ELWN    RKATL+EGV  L+
Sbjct: 607 EDEKLKSLKDEFGDEVHDAVATALKELNECNPSGRYPIPELWNFREGRKATLKEGVSHLI 666

Query: 273 SQWKTKKRK 281
            QWK  K K
Sbjct: 667 RQWKLNKGK 675


>Medtr3g067825.1 | XH/XS domain protein | HC |
           chr3:30455863-30457221 | 20130731
          Length = 118

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 49/68 (72%)

Query: 214 DEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLLS 273
           DEKL +L++ +   A  AV  A KEMN++NPSG  ++SELWNH  +R+ATL+EG++FL +
Sbjct: 35  DEKLNELKESIGEAAYDAVAIALKEMNEYNPSGGCLISELWNHKEERRATLQEGIQFLAN 94

Query: 274 QWKTKKRK 281
               K+++
Sbjct: 95  NPSNKRKR 102


>Medtr2g097020.1 | XH/XS domain protein | HC |
           chr2:41482585-41486302 | 20130731
          Length = 667

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +D+KLK L+ E   E   AV  A KE+N++NPSGR+ + ELWN    RKA+L+EGV  L+
Sbjct: 596 EDKKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPIPELWNFREGRKASLKEGVSHLI 655

Query: 273 SQWKTKKRK 281
            QW+  K K
Sbjct: 656 KQWRLNKGK 664


>Medtr2g097000.1 | XH/XS domain protein | HC |
           chr2:41469407-41472176 | 20130731
          Length = 389

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 44/69 (63%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKLK L+ E   E   AV  A KE+N+ NPSGR+ + ELWN    RKATL+EGV  L+
Sbjct: 318 EDEKLKSLKDEFGDEVHDAVATALKELNECNPSGRYPIPELWNFREGRKATLKEGVSHLI 377

Query: 273 SQWKTKKRK 281
            QW   K K
Sbjct: 378 RQWILNKGK 386


>Medtr4g006760.1 | XH/XS domain protein | HC | chr4:797451-803235 |
           20130731
          Length = 626

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 47/69 (68%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKL++L+KE   E   AVV A KE+N++NPSG + V ELWN    RKATL+E + +++
Sbjct: 555 EDEKLQKLKKEWGDEIYSAVVTALKEVNEYNPSGGYTVWELWNFKENRKATLKEVITYIV 614

Query: 273 SQWKTKKRK 281
              K  KRK
Sbjct: 615 DHMKQLKRK 623


>Medtr4g046643.1 | XH/XS domain protein | HC |
           chr4:16410194-16406263 | 20130731
          Length = 719

 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEF 270
           +DEKLK L+ EV  EA  AV  A KE+N++NPSGR  + ELWN    RKA+L+EG E 
Sbjct: 599 EDEKLKSLKDEVGDEAHDAVSTALKELNEYNPSGRNPIPELWNFKEGRKASLKEGFEL 656


>Medtr4g125920.1 | XH/XS domain protein | HC |
           chr4:52281801-52288038 | 20130731
          Length = 629

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 47/69 (68%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKLK+L++E   E   AV  A KE+N++NPSG + V ELWN   +RKATL+E + +++
Sbjct: 559 EDEKLKKLKQEWGDEIYSAVETALKEVNEYNPSGGYAVYELWNFKEQRKATLKEVITYIV 618

Query: 273 SQWKTKKRK 281
              K  KRK
Sbjct: 619 EHMKQLKRK 627


>Medtr4g131350.1 | XH/XS domain protein | HC |
           chr4:54788977-54795616 | 20130731
          Length = 682

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 47/69 (68%)

Query: 213 DDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKATLEEGVEFLL 272
           +DEKLK+L++E   E   AV  A KE+N++NPSG + V ELWN   +RKATL+E + +++
Sbjct: 612 EDEKLKKLKQEWGDEIYSAVETALKEVNEYNPSGGYSVHELWNFKEQRKATLKEVITYIV 671

Query: 273 SQWKTKKRK 281
              K  KRK
Sbjct: 672 EHMKQLKRK 680


>Medtr4g131310.1 | XH/XS domain protein | HC |
           chr4:54778297-54775559 | 20130731
          Length = 458

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 27/137 (19%)

Query: 137 LAAMKQQN-EHKSVLKLVEDLKDKNEKLNAKIVELEKPPNLLQESEDFNQSLIIKERESN 195
           L A K+QN  +++V +LVED K + E     I EL+    +++  ED +   +I E    
Sbjct: 344 LLASKEQNIAYENVFRLVEDQKKEME-----IEELKGKLQVMKHLEDQDDESVINE---- 394

Query: 196 DELQKARKRMIEEEIVCDDEKLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWN 255
                            +DEKLK+L++E   E   AV  A KE+N++NPSG + V ELWN
Sbjct: 395 -----------------EDEKLKKLKQEWGDEIYSAVETALKEVNEYNPSGGYAVHELWN 437

Query: 256 HGMKRKATLEEGVEFLL 272
              +RKATL+E + +++
Sbjct: 438 FKEQRKATLKEVITYIV 454


>Medtr3g067845.1 | XH/XS domain protein | LC |
           chr3:30465601-30466796 | 20130731
          Length = 278

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 206 IEEEIVCDDE--KLKQLRKEVSFEAQWAVVQAWKEMNDHNPSGRFVVSELWNHGMKRKAT 263
           + ++++ +D   KL +L+K +   A   +V A  E N+++ SG + + ELWN+  KR+AT
Sbjct: 173 VAKQVIINDTHGKLNRLKKRIGQAAYNDIVAALIEKNENDSSGEYPLFELWNYEKKRRAT 232

Query: 264 LEEGVEFLLSQWKTKKRKIHQTGTDDGENADS 295
           L+EGVEFL  Q ++ KRK       +G+ AD+
Sbjct: 233 LQEGVEFLF-QNRSNKRK-----RGNGDPADN 258