Miyakogusa Predicted Gene

Lj0g3v0275109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0275109.1 Non Characterized Hit- tr|E9CB76|E9CB76_CAPO3
Putative uncharacterized protein OS=Capsaspora
owczarz,26.64,5e-17,RIBONUCLEASE P/MRP SUBUNIT,NULL; POP1,Ribonuclease
P/MRP, subunit POP1,CUFF.18236.1
         (342 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g008840.1 | ribonuclease P | HC | chr4:1706291-1713206 | 2...   486   e-137

>Medtr4g008840.1 | ribonuclease P | HC | chr4:1706291-1713206 |
           20130731
          Length = 863

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/344 (69%), Positives = 279/344 (81%), Gaps = 16/344 (4%)

Query: 1   MLTEGTRKPQGSVPI--PPRKINVQKYAKSRGPELLSLQSIVENRLNNNYSSQRNKRRRT 58
           M+T+ T+KP+GS PI  PPRKINV K+A++R  EL SLQ IVENRL+N+Y SQRNKRRRT
Sbjct: 1   MVTDVTKKPKGSAPIAAPPRKINVPKFAEARASELQSLQCIVENRLSNDYKSQRNKRRRT 60

Query: 59  TAFDSQIARKGGNRKRQKLGAVDKAHDESVLEKDQLKKLPRHIRRRYELKMNPENGFCTS 118
           T+F+ QIARKG  RKRQKLG VDKA+ ES L+KD + +LPRH+RRRYELK NPENGFCTS
Sbjct: 61  TSFNDQIARKGHRRKRQKLGRVDKANVESRLKKDDITQLPRHVRRRYELKSNPENGFCTS 120

Query: 119 GDGTKRLRTHVWHAKRFAMTKLWGYNLPLGFQGRGKGSRAVLKRFKEGVLLHDSSYYTAV 178
           G GTKRLRTHVWHAKRF+MTKLW Y+LPLG QGRGKGSRA+L++ K+GVL HD+SYY+AV
Sbjct: 121 GGGTKRLRTHVWHAKRFSMTKLWSYHLPLGLQGRGKGSRALLRKLKQGVLAHDASYYSAV 180

Query: 179 QLEGPEDSLVSVLRMVLLPS-LETETPGNHDFSVLSGITYGTAMLYQVGAPVSQPIAPVT 237
           QLEGPEDSL+S+LR VL+PS +E   P NHD SVLSG TYGTAML+QVGAPVSQ IAPVT
Sbjct: 181 QLEGPEDSLISILRTVLVPSPIEVTHPRNHDDSVLSGTTYGTAMLHQVGAPVSQAIAPVT 240

Query: 238 YIWRPTFPQNKSTELDGRNHHTSSSQHDINDNSSNHDADLCEKSDVMKCGSSFRHIWVWI 297
           Y+WRP F +N  T+L             ++D     D DLC+KS+ M C SSFRH+WVWI
Sbjct: 241 YMWRPAFQEN-ITDL------------GVSDEKIILDVDLCDKSERMDCSSSFRHLWVWI 287

Query: 298 HASAFEEGYDSLKFACQKEMEKSGVLINCLSLEGQLGKLELMGS 341
           HASAFEEGY +LK ACQKE+EK G+ INC SLEGQL KLEL+GS
Sbjct: 288 HASAFEEGYANLKLACQKELEKRGISINCSSLEGQLAKLELIGS 331