Miyakogusa Predicted Gene

Lj0g3v0274949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274949.1 tr|B9HPB5|B9HPB5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650211 PE=4
SV=1,43.75,7e-19,seg,NULL,CUFF.18220.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g069570.1 | hypothetical protein | HC | chr3:31118242-3112...    92   2e-19
Medtr5g081360.1 | hypothetical protein | HC | chr5:34850073-3485...    90   7e-19
Medtr5g012280.1 | hypothetical protein | LC | chr5:3653222-36510...    52   3e-07

>Medtr3g069570.1 | hypothetical protein | HC |
           chr3:31118242-31121359 | 20130731
          Length = 167

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 1   MDNNNNRKKVXXXXXXXXXPTNFDHLFGPKDPXXXXXXXXXXFGSMFPPPSTAGRRDPIK 60
           M+N NN+KKV         PTNFDHLFGPKDP          F S+FPPPST G RD  +
Sbjct: 1   MENKNNKKKVGGAGSSSSTPTNFDHLFGPKDPSTTSSSSNSIFSSIFPPPSTGGWRDSTR 60

Query: 61  QDMGTKNYGAPGKXXXX---XXXXXXXXXXXXYQNETVEP-XXXXXXXXXGGQENY-SPR 115
            DMG+  YGAPG                    YQNETVEP          GGQENY SP 
Sbjct: 61  HDMGSNTYGAPGNYSNKGGNSANKNTGSDTTYYQNETVEPSNYYSSSIYYGGQENYNSPT 120

Query: 116 TRTTESQQNFX--XXXXXXXXXXXXXXXASRGNWWQG 150
           T  T    +F                  ASRGNWW+G
Sbjct: 121 TCKTTQTPHFTKKNKDDDDDSNGSDSGSASRGNWWKG 157


>Medtr5g081360.1 | hypothetical protein | HC |
           chr5:34850073-34852831 | 20130731
          Length = 149

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 23  FDHLFGPKDPXXXXXXXXXXFGSMFPPPSTAGR--RDPIKQDMGTKNYGAPGKXXXXXXX 80
           FD LFGPKDP          FGS+FPPP T     R    Q++G+KN GA G        
Sbjct: 19  FDQLFGPKDPSSASSSSL--FGSIFPPPPTPSVEGRGSRTQEVGSKNLGATG-TTPSDGI 75

Query: 81  XXXXXXXXXYQNETVEPXXXXXXXXXGGQENYSPRTRTTESQQNFXXXXXXXXXXXXXXX 140
                    YQNET+EP         GGQENYSPR RTTE    F               
Sbjct: 76  SYNKNTCTNYQNETMEPSYYSSSIYYGGQENYSPRNRTTEPHHVFKKDKNHGDHNGNNSS 135

Query: 141 XASRGNWWQGSLYY 154
            ASRG+WW+GSLYY
Sbjct: 136 SASRGDWWEGSLYY 149


>Medtr5g012280.1 | hypothetical protein | LC | chr5:3653222-3651032
           | 20130731
          Length = 144

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 60/154 (38%), Gaps = 10/154 (6%)

Query: 1   MDNNNNRKKVXXXXXXXXXPTNFDHLFGPKDPXXXXXXXXXXFGSMFPPPSTAGRRDPIK 60
           MDNN N+              NF+ LF  KD             S+FP PS  G+     
Sbjct: 1   MDNNKNQ---TCSSSNSSSTVNFNQLFSSKDSTTASFSSFFD--SLFPQPSVEGKGSRT- 54

Query: 61  QDMGTKNYGAPGKXXXXXXXXXXXXXXXXYQNETVEPXXXXXXXXXGGQENYSPRTRTTE 120
           +++G+K+  APG                 YQNETVEP         GG E+Y     T E
Sbjct: 55  EEVGSKSLEAPG--TPNSDISNKNTNSTDYQNETVEPTYFSSSIHYGGCEDYFSEGSTIE 112

Query: 121 SQQNFXXXXXXXXXXXXXXXXASRGNWWQGSLYY 154
            +                   ASRG+WWQGSLYY
Sbjct: 113 PRH--VKYTNNGDLNGNNSNSASRGDWWQGSLYY 144