Miyakogusa Predicted Gene

Lj0g3v0274919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274919.1 tr|G7JX88|G7JX88_MEDTR COSII OS=Medicago
truncatula GN=MTR_5g057670 PE=2 SV=1,90.05,0,seg,NULL; DUF1218,Protein
of unknown function DUF1218; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NU,CUFF.18451.1
         (191 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-238049...   296   7e-81
Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-236539...   296   7e-81
Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-357252...   141   3e-34
Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-357253...   141   3e-34
Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-357252...   141   3e-34
Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-357252...   141   3e-34
Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-336429...   123   1e-28
Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-496023...   122   1e-28
Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-496128...    96   3e-20
Medtr4g077250.1 | transmembrane protein, putative | HC | chr4:29...    48   6e-06

>Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-23804986
           | 20130731
          Length = 191

 Score =  296 bits (759), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 153/191 (80%)

Query: 1   MAEGRGSTXXXXXXXXXXXXXXXXXXXXERRRSVGTMYQVEGKNETYCVYSSDVATGYGV 60
           MAEGRGST                    ERRRSVGT+++  G NETYCVYSSDVATGYGV
Sbjct: 1   MAEGRGSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPGTNETYCVYSSDVATGYGV 60

Query: 61  GAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIYFMSSWATFLVAESCLIAGATKN 120
           GA           MGVTKCMCFGRPLTPGGNRAWSIIYF+SSWATFLVAESCLIAGA KN
Sbjct: 61  GAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKN 120

Query: 121 AYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMILNVYYYMYFTKATTTPLSQKANR 180
           AYHTKYRG+IYAQNFSCESLRKGIF+T A+FIV TM+LNVYYYMYFTKATTTPLSQK NR
Sbjct: 121 AYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTNR 180

Query: 181 VSSTVGMTGYA 191
           VSSTVGMTGYA
Sbjct: 181 VSSTVGMTGYA 191


>Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-23653955
           | 20130731
          Length = 191

 Score =  296 bits (759), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 153/191 (80%)

Query: 1   MAEGRGSTXXXXXXXXXXXXXXXXXXXXERRRSVGTMYQVEGKNETYCVYSSDVATGYGV 60
           MAEGRGST                    ERRRSVGT+++  G NETYCVYSSDVATGYGV
Sbjct: 1   MAEGRGSTLVHLLVIVFCLVAFGFAVAAERRRSVGTIHKTPGTNETYCVYSSDVATGYGV 60

Query: 61  GAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIYFMSSWATFLVAESCLIAGATKN 120
           GA           MGVTKCMCFGRPLTPGGNRAWSIIYF+SSWATFLVAESCLIAGA KN
Sbjct: 61  GAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKN 120

Query: 121 AYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMILNVYYYMYFTKATTTPLSQKANR 180
           AYHTKYRG+IYAQNFSCESLRKGIF+T A+FIV TM+LNVYYYMYFTKATTTPLSQK NR
Sbjct: 121 AYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTNR 180

Query: 181 VSSTVGMTGYA 191
           VSSTVGMTGYA
Sbjct: 181 VSSTVGMTGYA 191


>Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-35725261
           | 20130731
          Length = 183

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 29  ERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTP 88
           +RR S      +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P
Sbjct: 26  QRRSSANLAKNIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRP 83

Query: 89  GGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTA 148
            G+R+W+I  F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   
Sbjct: 84  SGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAG 143

Query: 149 AVFIVATMILNVYYYMYFTKA 169
           A FIV T I++  YY+ F+KA
Sbjct: 144 AAFIVLTGIVSELYYVSFSKA 164


>Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-35725376
           | 20130731
          Length = 183

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 29  ERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTP 88
           +RR S      +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P
Sbjct: 26  QRRSSANLAKNIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRP 83

Query: 89  GGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTA 148
            G+R+W+I  F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   
Sbjct: 84  SGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAG 143

Query: 149 AVFIVATMILNVYYYMYFTKA 169
           A FIV T I++  YY+ F+KA
Sbjct: 144 AAFIVLTGIVSELYYVSFSKA 164


>Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-35725261
           | 20130731
          Length = 183

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 29  ERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTP 88
           +RR S      +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P
Sbjct: 26  QRRSSANLAKNIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRP 83

Query: 89  GGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTA 148
            G+R+W+I  F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   
Sbjct: 84  SGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAG 143

Query: 149 AVFIVATMILNVYYYMYFTKA 169
           A FIV T I++  YY+ F+KA
Sbjct: 144 AAFIVLTGIVSELYYVSFSKA 164


>Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-35725261
           | 20130731
          Length = 183

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 2/141 (1%)

Query: 29  ERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTP 88
           +RR S      +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P
Sbjct: 26  QRRSSANLAKNIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRP 83

Query: 89  GGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTA 148
            G+R+W+I  F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   
Sbjct: 84  SGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAG 143

Query: 149 AVFIVATMILNVYYYMYFTKA 169
           A FIV T I++  YY+ F+KA
Sbjct: 144 AAFIVLTGIVSELYYVSFSKA 164


>Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-33642906
           | 20130731
          Length = 186

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 90/141 (63%)

Query: 29  ERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTP 88
           E+RRS   +   + +N  YCVY SD ATGYGV A           M V++C C G+PL P
Sbjct: 25  EQRRSTAKIVPDKEQNYNYCVYDSDRATGYGVVAFLFLMISQIVIMVVSRCFCCGKPLKP 84

Query: 89  GGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTA 148
           GG+RA +I+ F+  W  F++AE CL+AG+ +NAYHTKYR +  +   SCE++RKG+F   
Sbjct: 85  GGSRACAIVLFIVCWVFFIIAEVCLLAGSVENAYHTKYRTLFVSDPPSCETVRKGVFAAG 144

Query: 149 AVFIVATMILNVYYYMYFTKA 169
           A F+  T I++ +YY+ ++ A
Sbjct: 145 AAFVFFTSIVSKFYYINYSSA 165


>Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-49602362
           | 20130731
          Length = 193

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 85/152 (55%)

Query: 29  ERRRSVGTMYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTP 88
           ERRRS   +   E    T+CVY++D +T YGV A             VT+C+C G+ L  
Sbjct: 26  ERRRSEAKVVPDEYDERTFCVYTTDASTVYGVAAFSLLLLSQTVLNAVTRCLCCGKGLIS 85

Query: 89  GGNRAWSIIYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTA 148
           G +   ++I+F+ SW  FL AE+CL+AG+ +NAYHTKYRG     + SC +LRKG+F   
Sbjct: 86  GCSTTCAVIFFILSWTGFLAAEACLLAGSARNAYHTKYRGNFVTHDLSCATLRKGVFAAG 145

Query: 149 AVFIVATMILNVYYYMYFTKATTTPLSQKANR 180
           A   + +M+ ++ YY    KA T    +  N 
Sbjct: 146 AALTLFSMLASILYYWAHAKADTGFWEKHQNE 177


>Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-49612840
           | 20130731
          Length = 190

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%)

Query: 39  QVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIY 98
           ++   + T CVY++D +T YG  A             +T+C C G+ L PG + + +II 
Sbjct: 34  ELPNDDGTICVYTTDASTFYGFVAFSFLLVNQVFLNLITRCFCCGKGLVPGRSTSCAIIC 93

Query: 99  FMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMIL 158
           ++ SW  FL AE+CL+ G+T +AY TKY+G       SC +LRKG+F   AV  + +M+ 
Sbjct: 94  YILSWIGFLAAEACLLVGSTTSAYKTKYQGYYSTLGLSCSALRKGVFAVGAVLTLFSMLT 153

Query: 159 NVYYYMYFTKA 169
           ++ YY  + KA
Sbjct: 154 SILYYWAYCKA 164


>Medtr4g077250.1 | transmembrane protein, putative | HC |
           chr4:29600281-29602521 | 20130731
          Length = 211

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 5/153 (3%)

Query: 38  YQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRP-LTPGGNRAWSI 96
           YQ++  N   C+Y    A   G+ A              T C+C  +    P  N   ++
Sbjct: 34  YQIQFINPNQCIYPRSPALPLGLTAALSLMISQIVINVSTGCICCRKSSRIPDSNWTVAL 93

Query: 97  IYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATM 156
             F+ SW T+++A   L+ GA  N    +    +Y   + C  ++ G+F   A+  +A++
Sbjct: 94  ACFVLSWFTYVIAFLLLLTGAALN--DQRGEESVYFGTYYCYVVKPGVFAGGAILSLASV 151

Query: 157 ILNVYYYMYFT--KATTTPLSQKANRVSSTVGM 187
           +  + YY+     K   TP    +     T+ M
Sbjct: 152 VFGIVYYITLMEGKNARTPFGDSSYPNQGTIAM 184