Miyakogusa Predicted Gene

Lj0g3v0274089.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274089.1 tr|C1MLL0|C1MLL0_MICPC WD40 repeat
domain-containing protein OS=Micromonas pusilla (strain
CCMP1545),21.02,7e-17,SUBFAMILY NOT NAMED,NULL; WD REPEAT
PROTEIN,NULL; no description,WD40/YVTN repeat-like-containing
do,CUFF.18181.1
         (590 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g110260.1 | transducin/WD-like repeat-protein | HC | chr7:...   943   0.0  

>Medtr7g110260.1 | transducin/WD-like repeat-protein | HC |
           chr7:45176758-45193568 | 20130731
          Length = 1374

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/590 (78%), Positives = 519/590 (87%), Gaps = 2/590 (0%)

Query: 1   MFSIGIPNVVEHIGLMDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDTGGAQWNQLV 60
           MFSI IPN++EHIGL DSKSEYVRCLRFS QDSL+VATNHGYLYHAKLC+ GGA WNQLV
Sbjct: 378 MFSICIPNMLEHIGLTDSKSEYVRCLRFSSQDSLFVATNHGYLYHAKLCEAGGACWNQLV 437

Query: 61  QVSNRTPIICMDLLSKDSFKLDYGAEDWIAIGDGKGNMTVLGVSNDGCTPSVRLSFTWKA 120
           QVSN   IICMDLLSKDSF+   G EDWIAIGDGKGNMTV+ V+N+ C P+VRLSFTW+A
Sbjct: 438 QVSNGAQIICMDLLSKDSFEQGCGDEDWIAIGDGKGNMTVVVVTNNDCAPTVRLSFTWQA 497

Query: 121 EIERQLLGTYWCKSLGCRYIFTADPRGRLKLWRLPDPSESDLESFMRCNSVSQIAEFISS 180
           E+ERQLLGTYWCKSLG RY+FT DPRG LKLWRLPDPS+S+ ++ MR + VS  AEFISS
Sbjct: 498 EMERQLLGTYWCKSLGSRYVFTTDPRGGLKLWRLPDPSQSNSQNSMR-DIVSHAAEFISS 556

Query: 181 YGMRIMCLDICLEEEVLACGDVRGNMLIFPLLKDLVLGTSVAPEMKIPPVNHFKGVHGIS 240
           YGMRIMCLD CLEEEVLACGD+RGNM++FPLLK+LVLGTSVA EMKIPPVNHFKGVHGIS
Sbjct: 557 YGMRIMCLDACLEEEVLACGDLRGNMVLFPLLKNLVLGTSVAQEMKIPPVNHFKGVHGIS 616

Query: 241 SVSSIFVTRIGYNQIEICSTGADGCICYLEYDREMQNLQFTGMKQVKELTLIEYVSMDN- 299
           SVSS+ VT++GYNQIEI STGADGCICYLEYD EMQ+LQFTGMKQVKEL+ IE+VS+DN 
Sbjct: 617 SVSSVVVTKLGYNQIEIRSTGADGCICYLEYDGEMQHLQFTGMKQVKELSSIEHVSVDNN 676

Query: 300 ALDTLSGSYAAGFASVDFIIWNLVNENMVVKIPCGGWRRPHSYYLGDVPEMKNCFAYVKD 359
           + DT S SYAAGFASVDFI+WNLVNEN VVKIPCGGWRRPHSY+LGDVPEMKNCFA+VKD
Sbjct: 677 SEDTSSRSYAAGFASVDFIVWNLVNENKVVKIPCGGWRRPHSYFLGDVPEMKNCFAFVKD 736

Query: 360 EMIHIHRHWLHDRDKKIYPQSLHMQFHGREIHSLCFISEDMLLRDNYKHALVSKSSWIAT 419
           E+I+IHRHW++D   KIYP SLHMQFHGREIHSLCFI EDMLL D  K A  SKSSWIAT
Sbjct: 737 EIIYIHRHWINDNVGKIYPLSLHMQFHGREIHSLCFIHEDMLLGDYCKRASFSKSSWIAT 796

Query: 420 GCEDGTVRLTWYSSGIENWSMSKLLGEHVGGSAVRSICCVSKLHTFSSDTTDVPNGRSEV 479
           GCEDGTVRLTWYS GIENWSMSKLLGEHVGGSAVRSICCVSKLH   S TT+VP+GRSE 
Sbjct: 797 GCEDGTVRLTWYSPGIENWSMSKLLGEHVGGSAVRSICCVSKLHIIPSATTEVPDGRSEH 856

Query: 480 NAADKDKDSPTLLISVGAKRVITSWLLKTTSRDSKNDFLTDHQYNSKGVDDKFVSSLSSS 539
           NAAD+DKD+P LLISVGAKRV+TSWLLK+   D K +F TD+Q+++K +DD+F+SS+SSS
Sbjct: 857 NAADEDKDNPILLISVGAKRVLTSWLLKSRKLDDKTNFRTDNQHDAKELDDQFLSSMSSS 916

Query: 540 MTFQWLSTDMPAKYSTTYKYPENNVKKVVGVAENVSNTKTDAEPGSLVPD 589
           MTFQWLSTDMP KYS+T++Y ENNV K V VAE+ S  K DAE GSL+ +
Sbjct: 917 MTFQWLSTDMPTKYSSTHRYTENNVGKAVDVAESGSKIKIDAEAGSLISE 966