Miyakogusa Predicted Gene

Lj0g3v0273739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0273739.1 Non Characterized Hit- tr|D7KFW9|D7KFW9_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,41.11,0.00000000002,FtsH protease domain-like,NULL; seg,NULL;
FTSH HOMOLOG,NULL; METALLOPROTEASE M41 FTSH,NULL;
Peptidas,CUFF.18142.1
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g056860.1 | ATP-dependent zinc metalloprotease FTSH protei...   227   5e-60
Medtr3g115110.1 | ATP-dependent zinc metalloprotease FTSH protei...    71   4e-13
Medtr3g115110.2 | ATP-dependent zinc metalloprotease FTSH protei...    55   3e-08

>Medtr8g056860.1 | ATP-dependent zinc metalloprotease FTSH protein |
           HC | chr8:18930054-18944115 | 20130731
          Length = 988

 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/124 (86%), Positives = 114/124 (91%)

Query: 1   MSVRKGHSKIFQQDLIDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHVV 60
           MSVR GH KIFQQD+ DVLDKQLLEGMGVL+TE+EQ+K EE VSFEKKRLLAVHEAGH+V
Sbjct: 696 MSVRNGHPKIFQQDITDVLDKQLLEGMGVLITEDEQKKSEERVSFEKKRLLAVHEAGHIV 755

Query: 61  LAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAER 120
           LAHLFPRFD HAFSQLLPGGKETAISVF PREDMVDQGYTTFGY+ MQMVVAHGGRCAE 
Sbjct: 756 LAHLFPRFDLHAFSQLLPGGKETAISVFNPREDMVDQGYTTFGYLKMQMVVAHGGRCAEH 815

Query: 121 LGFG 124
           + FG
Sbjct: 816 VIFG 819


>Medtr3g115110.1 | ATP-dependent zinc metalloprotease FTSH protein |
           HC | chr3:53794996-53799860 | 20130731
          Length = 706

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 12  QQDLIDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHVVLAHLFPRFDWH 71
           ++DL ++   ++ + +  ++   E++     VS EKK+L+A HEAGH ++  L P +D  
Sbjct: 474 RRDLKEISKDEIADALERIIAGPEKKNA--VVSEEKKKLVAYHEAGHALVGALMPEYDPV 531

Query: 72  AFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERLGFG 124
           A   ++P G+   ++ F P E+ ++ G  +  Y+  QM VA GGR AE + FG
Sbjct: 532 AKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFG 584


>Medtr3g115110.2 | ATP-dependent zinc metalloprotease FTSH protein |
           HC | chr3:53795178-53799465 | 20130731
          Length = 499

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query: 55  EAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHG 114
           EAGH ++  L P +D  A   ++P G+   ++ F P E+ ++ G  +  Y+  QM VA G
Sbjct: 308 EAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALG 367

Query: 115 GRCAERLGFG 124
           GR AE + FG
Sbjct: 368 GRVAEEVIFG 377