Miyakogusa Predicted Gene
- Lj0g3v0273479.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0273479.1 Non Characterized Hit- tr|I1KWF8|I1KWF8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,89.11,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1;
RNase_PH_C,Exoribonuclease, phosphorolytic domain,CUFF.18117.1
(303 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g007060.1 | exosome complex exonuclease RRP46 | HC | chr1:... 464 e-131
Medtr1g007060.2 | exosome complex exonuclease RRP46 | HC | chr1:... 417 e-117
Medtr2g019210.2 | exosome complex exonuclease RRP41 | HC | chr2:... 90 3e-18
Medtr2g019210.3 | exosome complex exonuclease RRP41 | HC | chr2:... 90 3e-18
Medtr2g019210.1 | exosome complex exonuclease RRP41 | HC | chr2:... 89 4e-18
Medtr1g063090.1 | exosome complex exonuclease RRP41 | HC | chr1:... 89 5e-18
Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC | chr1:... 80 2e-15
Medtr8g077430.1 | exosome complex exonuclease RRP41 | HC | chr8:... 80 3e-15
Medtr8g077430.2 | exosome complex exonuclease RRP41 | HC | chr8:... 80 3e-15
Medtr8g077430.3 | exosome complex exonuclease RRP41 | HC | chr8:... 80 3e-15
>Medtr1g007060.1 | exosome complex exonuclease RRP46 | HC |
chr1:171864-178799 | 20130731
Length = 304
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/305 (76%), Positives = 255/305 (83%), Gaps = 3/305 (0%)
Query: 1 MGLPNT--SEDLSSEMEVDAXXXXXXXXXXXXXXSESIRPDGRPLAKARDTSIFLGAVAS 58
M +PN +EDLSSEMEVDA +ESIR DGRPL +ARDTSIFLGAVAS
Sbjct: 1 MSVPNAAATEDLSSEMEVDAFRRLFPLRYFERHLAESIRSDGRPLREARDTSIFLGAVAS 60
Query: 59 ANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAIDFHMPPICSPIVRPGRPAEASPV 118
ANGSALVKIGSTTMLTAIKMEVM PSLESPD GC+AIDFHMPPICSPIVRPGRPAEA PV
Sbjct: 61 ANGSALVKIGSTTMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPV 120
Query: 119 VTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQ 178
V+KQLSDTI+SSGMIDL+ELSLV GKAAWMAYLD+YC Q
Sbjct: 121 VSKQLSDTITSSGMIDLRELSLVGGKAAWMAYLDIYCLDADGSLFDAALLSAVAALSHLQ 180
Query: 179 IPSVAMNDDGKIVLVSDEDGQKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAE 238
IP+VAMNDDGKIVL+SDEDGQKQA+E VNKEKRKLTL++IP SLTCIL+KNYILADPTAE
Sbjct: 181 IPAVAMNDDGKIVLMSDEDGQKQAKEQVNKEKRKLTLKSIPLSLTCILHKNYILADPTAE 240
Query: 239 EESIMETHMTVVLNTSGQLISLYKPGGPVLAYTSALQDCVALTRQRVKELKSLLDRENSA 298
EESI+ETH+T++L+TSGQLISLYKPGGPVLAYTSA+QDCVALTRQRVKELKS LD+ENS
Sbjct: 241 EESIVETHVTIILDTSGQLISLYKPGGPVLAYTSAIQDCVALTRQRVKELKSFLDKENS- 299
Query: 299 AMEVE 303
AMEVE
Sbjct: 300 AMEVE 304
>Medtr1g007060.2 | exosome complex exonuclease RRP46 | HC |
chr1:171864-178056 | 20130731
Length = 284
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/277 (75%), Positives = 229/277 (82%), Gaps = 2/277 (0%)
Query: 1 MGLPNT--SEDLSSEMEVDAXXXXXXXXXXXXXXSESIRPDGRPLAKARDTSIFLGAVAS 58
M +PN +EDLSSEMEVDA +ESIR DGRPL +ARDTSIFLGAVAS
Sbjct: 1 MSVPNAAATEDLSSEMEVDAFRRLFPLRYFERHLAESIRSDGRPLREARDTSIFLGAVAS 60
Query: 59 ANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAIDFHMPPICSPIVRPGRPAEASPV 118
ANGSALVKIGSTTMLTAIKMEVM PSLESPD GC+AIDFHMPPICSPIVRPGRPAEA PV
Sbjct: 61 ANGSALVKIGSTTMLTAIKMEVMIPSLESPDEGCLAIDFHMPPICSPIVRPGRPAEAEPV 120
Query: 119 VTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQ 178
V+KQLSDTI+SSGMIDL+ELSLV GKAAWMAYLD+YC Q
Sbjct: 121 VSKQLSDTITSSGMIDLRELSLVGGKAAWMAYLDIYCLDADGSLFDAALLSAVAALSHLQ 180
Query: 179 IPSVAMNDDGKIVLVSDEDGQKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAE 238
IP+VAMNDDGKIVL+SDEDGQKQA+E VNKEKRKLTL++IP SLTCIL+KNYILADPTAE
Sbjct: 181 IPAVAMNDDGKIVLMSDEDGQKQAKEQVNKEKRKLTLKSIPLSLTCILHKNYILADPTAE 240
Query: 239 EESIMETHMTVVLNTSGQLISLYKPGGPVLAYTSALQ 275
EESI+ETH+T++L+TSGQLISLYKPGGPVLAYTSA+Q
Sbjct: 241 EESIVETHVTIILDTSGQLISLYKPGGPVLAYTSAIQ 277
>Medtr2g019210.2 | exosome complex exonuclease RRP41 | HC |
chr2:6209367-6213281 | 20130731
Length = 364
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 22/264 (8%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR R +I G +GSA +++G T +++ + +++ P + P+ G ++I
Sbjct: 27 LRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQLVQPYKDRPNEGTLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S ID + L ++S K W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQAQELVN----KEKR 211
+ P ++ EDGQ Q +V+ +E
Sbjct: 144 LDNAGNLVDAANIAALASLKTFRRPECSL---------GGEDGQ---QVVVHPPEVREPL 191
Query: 212 KLTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLA 269
L + ++P ++T + +N ++ DPT EE++M MT LN +G + ++ KPGG +
Sbjct: 192 PLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGV- 250
Query: 270 YTSALQDCVALTRQRVKELKSLLD 293
+ + C+ L + ++ S ++
Sbjct: 251 FQRVIMHCLKLAHVKAGDITSKIN 274
>Medtr2g019210.3 | exosome complex exonuclease RRP41 | HC |
chr2:6209367-6212019 | 20130731
Length = 364
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 22/264 (8%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR R +I G +GSA +++G T +++ + +++ P + P+ G ++I
Sbjct: 27 LRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQLVQPYKDRPNEGTLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S ID + L ++S K W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQAQELVN----KEKR 211
+ P ++ EDGQ Q +V+ +E
Sbjct: 144 LDNAGNLVDAANIAALASLKTFRRPECSL---------GGEDGQ---QVVVHPPEVREPL 191
Query: 212 KLTLRNIPFSLTCILY--KNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLA 269
L + ++P ++T + +N ++ DPT EE++M MT LN +G + ++ KPGG +
Sbjct: 192 PLIIHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGV- 250
Query: 270 YTSALQDCVALTRQRVKELKSLLD 293
+ + C+ L + ++ S ++
Sbjct: 251 FQRVIMHCLKLAHVKAGDITSKIN 274
>Medtr2g019210.1 | exosome complex exonuclease RRP41 | HC |
chr2:6209449-6213016 | 20130731
Length = 449
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 122/261 (46%), Gaps = 16/261 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR R +I G +GSA +++G T +++ + +++ P + P+ G ++I
Sbjct: 27 LRVDGRGPLDYRKLNIKFG---RDDGSAEIQLGETRVMSFVSAQLVQPYKDRPNEGTLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S ID + L ++S K W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCILSAKLVWAIRIDIHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAM-NDDGKIVLVSDEDGQKQAQELVNKEKRKLT 214
+ P ++ +DG+ V+V E+ +E L
Sbjct: 144 LDNAGNLVDAANIAALASLKTFRRPECSLGGEDGQQVVV-------HPPEV--REPLPLI 194
Query: 215 LRNIPFSLTCILY--KNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLAYTS 272
+ ++P ++T + +N ++ DPT EE++M MT LN +G + ++ KPGG + +
Sbjct: 195 IHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGRMTATLNANGDVCAIQKPGGQGV-FQR 253
Query: 273 ALQDCVALTRQRVKELKSLLD 293
+ C+ L + ++ S ++
Sbjct: 254 VIMHCLKLAHVKAGDITSKIN 274
>Medtr1g063090.1 | exosome complex exonuclease RRP41 | HC |
chr1:27736500-27739997 | 20130731
Length = 298
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 119/258 (46%), Gaps = 16/258 (6%)
Query: 36 IRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGCIAI 95
+R DGR + R SI G NGSA V++G T +++ + E++ P + P+ G ++I
Sbjct: 27 LRVDGRGSLEYRKLSIKFG---KDNGSAEVQLGETRVMSFVSAELVQPYKDRPNEGTLSI 83
Query: 96 DFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYC 155
P+ P PGRP E++ + + + + S ID + L ++S K W +D++
Sbjct: 84 FTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAIDTESLCVLSAKLVWAIRIDIHI 143
Query: 156 XXXXXXXXXXXXXXXXXXXXXXQIPSVAM-NDDGKIVLVSDEDGQKQAQELVNKEKRKLT 214
+ ++ +DG+ V+V + +E L
Sbjct: 144 LDNAGNLVDAANIAALASLSTFRRSECSLGGEDGQQVVVHPPE---------VREPLPLI 194
Query: 215 LRNIPFSLTCILY--KNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPVLAYTS 272
+ ++P ++T + +N ++ DPT EE++M MTV LN +G + ++ KPG + +
Sbjct: 195 IHHLPVAVTFGFFSNENLVVLDPTYHEEAVMTGSMTVTLNANGDVCAIQKPGRQGI-FQR 253
Query: 273 ALQDCVALTRQRVKELKS 290
+ C+ L + ++ +
Sbjct: 254 VIMHCLKLAHVKAADITT 271
>Medtr1g031820.1 | exosome complex exonuclease RRP41 | HC |
chr1:11167445-11172254 | 20130731
Length = 683
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 118/272 (43%), Gaps = 13/272 (4%)
Query: 33 SESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGC 92
++ +R DGR R + G + ANGSA VKIG+T ++ ++K E+ PS PD G
Sbjct: 414 AQDLRCDGRKRLTYRPIHVETGVIPQANGSARVKIGATEVIASVKAELGKPSSMQPDKGK 473
Query: 93 IAIDFHMPPICSPIV--RPGR--PAEASPVVTKQLSDTISSSGM-IDLKELSLVSGKAAW 147
+ I P R G AE S + + L S +G ID L +V GK W
Sbjct: 474 VFIYIDCSSTAEPAFEGRGGEELSAELSTALQRCLLGAKSGAGAGIDRTSLVVVEGKICW 533
Query: 148 MAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIPSVAMNDDGKIVLVSDEDGQKQAQELVN 207
Y+D IPSV + D SDE + ++ +
Sbjct: 534 DLYIDGLVVSSDGNLLDALGSAIKAALSNTGIPSVKVTADAS----SDE---QPEVDVSD 586
Query: 208 KEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTVVLNTSGQLISLYKPGGPV 267
+E + +P +T + + D T EEES M + +++ +N G + + K GG
Sbjct: 587 EEFLQFDTSGVPVIITLTKIGRHYIVDATPEEESQMSSAVSISINRKGHICGITKRGGAG 646
Query: 268 LAYTSALQDCVALTRQRVKELKSLLDRENSAA 299
L S + D V++ + ++L + LD E ++A
Sbjct: 647 LD-PSVILDMVSVAKHVSEQLMNKLDSEIASA 677
>Medtr8g077430.1 | exosome complex exonuclease RRP41 | HC |
chr8:32861534-32866106 | 20130731
Length = 286
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 116/281 (41%), Gaps = 31/281 (11%)
Query: 33 SESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGC 92
+ +R DGR R + G + ANGSA V+IG+T ++ ++K E+ PSL PD G
Sbjct: 17 AHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQPDKGK 76
Query: 93 IAIDFHMPPICSPIVRPGRPAEASPVVTKQLSDTI---------SSSGMIDLKELSLVSG 143
++I CS P + ++ LS+ + + ID L +V G
Sbjct: 77 VSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEG 132
Query: 144 KAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIPSV-----AMNDDGKIVLVSDEDG 198
K W Y+D IP V A +D+ V VSDED
Sbjct: 133 KICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQPEVDVSDED- 191
Query: 199 QKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTVVLNTSGQLI 258
+ IP +T + + D T EEES M + +++ +N G +
Sbjct: 192 -----------FMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHIC 240
Query: 259 SLYKPGGPVLAYTSALQDCVALTRQRVKELKSLLDRENSAA 299
+ K GG L S + D V++ + ++L + LD E ++A
Sbjct: 241 GVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIASA 280
>Medtr8g077430.2 | exosome complex exonuclease RRP41 | HC |
chr8:32861534-32866106 | 20130731
Length = 286
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 116/281 (41%), Gaps = 31/281 (11%)
Query: 33 SESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGC 92
+ +R DGR R + G + ANGSA V+IG+T ++ ++K E+ PSL PD G
Sbjct: 17 AHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQPDKGK 76
Query: 93 IAIDFHMPPICSPIVRPGRPAEASPVVTKQLSDTI---------SSSGMIDLKELSLVSG 143
++I CS P + ++ LS+ + + ID L +V G
Sbjct: 77 VSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEG 132
Query: 144 KAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIPSV-----AMNDDGKIVLVSDEDG 198
K W Y+D IP V A +D+ V VSDED
Sbjct: 133 KICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQPEVDVSDED- 191
Query: 199 QKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTVVLNTSGQLI 258
+ IP +T + + D T EEES M + +++ +N G +
Sbjct: 192 -----------FMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHIC 240
Query: 259 SLYKPGGPVLAYTSALQDCVALTRQRVKELKSLLDRENSAA 299
+ K GG L S + D V++ + ++L + LD E ++A
Sbjct: 241 GVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIASA 280
>Medtr8g077430.3 | exosome complex exonuclease RRP41 | HC |
chr8:32861534-32866106 | 20130731
Length = 286
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 116/281 (41%), Gaps = 31/281 (11%)
Query: 33 SESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEVMAPSLESPDVGC 92
+ +R DGR R + G + ANGSA V+IG+T ++ ++K E+ PSL PD G
Sbjct: 17 AHDLRCDGRKRLTYRPILVETGVIPQANGSARVRIGATEVIASVKAELGKPSLMQPDKGK 76
Query: 93 IAIDFHMPPICSPIVRPGRPAEASPVVTKQLSDTI---------SSSGMIDLKELSLVSG 143
++I CS P + ++ LS+ + + ID L +V G
Sbjct: 77 VSIYID----CSSTAEPAFEGRGADWLSADLSNALQRCLLGAKSGAGAAIDRSSLVVVEG 132
Query: 144 KAAWMAYLDVYCXXXXXXXXXXXXXXXXXXXXXXQIPSV-----AMNDDGKIVLVSDEDG 198
K W Y+D IP V A +D+ V VSDED
Sbjct: 133 KICWDLYIDGLVVSSDGNLLDTLGAAIKVALSNTGIPKVQIAAGASSDEQPEVDVSDED- 191
Query: 199 QKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEESIMETHMTVVLNTSGQLI 258
+ IP +T + + D T EEES M + +++ +N G +
Sbjct: 192 -----------FMQFDTSGIPVIVTLTKVGKHYIVDATPEEESQMSSAVSISINRQGHIC 240
Query: 259 SLYKPGGPVLAYTSALQDCVALTRQRVKELKSLLDRENSAA 299
+ K GG L S + D V++ + ++L + LD E ++A
Sbjct: 241 GVTKRGGAGLD-PSVILDMVSVAKHVSEQLINKLDSEIASA 280