Miyakogusa Predicted Gene

Lj0g3v0273429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0273429.1 tr|Q00RM0|Q00RM0_ORYSA H0814G11.20 protein
OS=Oryza sativa GN=H0814G11.20 PE=4
SV=1,37.5,3e-19,DUF740,Uncharacterised protein family
UPF0503,CUFF.18105.1
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088010.1 | DUF740 family protein | HC | chr3:39895159-398...   193   1e-49

>Medtr3g088010.1 | DUF740 family protein | HC |
           chr3:39895159-39897620 | 20130731
          Length = 220

 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/232 (59%), Positives = 156/232 (67%), Gaps = 44/232 (18%)

Query: 3   NRSGFREEKPCCYFHPKQVVVGVCPLCLNERLLIVAATQGQ--HSKNR--------SSKA 52
           NR+G+R+EKPCC FHPKQVVVGVCPLCLNERLL++AA QG+  H  +R           +
Sbjct: 2   NRNGYRDEKPCCNFHPKQVVVGVCPLCLNERLLLLAAKQGRRHHHNHRSSSSSSSKKVAS 61

Query: 53  SNKVQSSVHTKP--ASSIHKIFAFGSLFSRQEWK----SDNFDCDVTSPSP-EDSFISIK 105
           S K+QSSVHTKP  +SSIHKIFAFGSLF+R E +      NF  D  SPSP EDSFISIK
Sbjct: 62  SQKLQSSVHTKPPNSSSIHKIFAFGSLFTRLESRHCKSHGNFHYDDISPSPEEDSFISIK 121

Query: 106 FEESTVSN---------KVSLENCNNKMSWNHHQNNKGTTTTIKSVIEHGKSRDAFRWRK 156
           FE + V++           SLENC         + N       KSVIEH KSRD FRWRK
Sbjct: 122 FEGNGVASWEKSTVSKVSSSLENC---------KKNHEDKLETKSVIEHAKSRDTFRWRK 172

Query: 157 RIGHMFQLIRWKK--GTCHVSSNTSKVEG--VKVRKGWMMRTLTKR-KKTME 203
           RIGHMFQLIRWKK  G CHV    +KVEG  VKVRKGW MRTLTKR KKTME
Sbjct: 173 RIGHMFQLIRWKKTGGVCHVG---NKVEGGAVKVRKGW-MRTLTKRKKKTME 220