Miyakogusa Predicted Gene

Lj0g3v0272429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272429.1 Non Characterized Hit- tr|I3T8M4|I3T8M4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.62,0,Ribosomal
protein L5,Ribosomal protein L5 domain; RIBOSOMAL_L5,Ribosomal protein
L5, conserved site;,CUFF.18015.1
         (147 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g007700.1 | 50S ribosomal protein L5P | HC | chr3:1126360-...   253   5e-68
Medtr4g080740.1 | 50S ribosomal protein L5P | HC | chr4:31198631...   253   5e-68
Medtr8g046140.1 | 50S ribosomal protein L5P | HC | chr8:18049015...   251   1e-67
Medtr3g007690.1 | 50S ribosomal protein L5P | HC | chr3:1122156-...   213   6e-56

>Medtr3g007700.1 | 50S ribosomal protein L5P | HC |
           chr3:1126360-1123167 | 20130731
          Length = 182

 Score =  253 bits (646), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 127/144 (88%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLR+
Sbjct: 38  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRR 97

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRV
Sbjct: 98  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRV 157

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+QA+
Sbjct: 158 TKDDAMKWFQVKYEGVILNKSQAI 181


>Medtr4g080740.1 | 50S ribosomal protein L5P | HC |
           chr4:31198631-31196319 | 20130731
          Length = 181

 Score =  253 bits (645), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 127/144 (88%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLR+
Sbjct: 37  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRR 96

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRV
Sbjct: 97  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRV 156

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDDAMKWFQVKYEGVILNK+QA+
Sbjct: 157 TKDDAMKWFQVKYEGVILNKSQAI 180


>Medtr8g046140.1 | 50S ribosomal protein L5P | HC |
           chr8:18049015-18045608 | 20130731
          Length = 181

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 127/144 (88%)

Query: 3   QVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRK 62
           +VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLR+
Sbjct: 37  KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRR 96

Query: 63  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRV 122
           NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                 IQHRV
Sbjct: 97  NFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRV 156

Query: 123 TKDDAMKWFQVKYEGVILNKAQAV 146
           TKDD+MKWFQVKYEGVILNK+QA+
Sbjct: 157 TKDDSMKWFQVKYEGVILNKSQAI 180


>Medtr3g007690.1 | 50S ribosomal protein L5P | HC |
           chr3:1122156-1120010 | 20130731
          Length = 241

 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 113/143 (79%)

Query: 4   VLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKN 63
           VL  LSGQTPV SKA++TVRSFG RRNEKI+CYVTVRGDKAMQLLES LKVKEY+LL +N
Sbjct: 99  VLHHLSGQTPVLSKAKHTVRSFGNRRNEKISCYVTVRGDKAMQLLESSLKVKEYKLLSRN 158

Query: 64  FSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLEXXXXXXXXXXXXXXXXXIQHRVT 123
           FSDTGCF F IQ+HI+LG KYDPS GIYGM+F+VVLE                 IQHRVT
Sbjct: 159 FSDTGCFCFSIQDHIELGFKYDPSIGIYGMNFFVVLERPGNRVGRRPRGKARLGIQHRVT 218

Query: 124 KDDAMKWFQVKYEGVILNKAQAV 146
           KDDAMKWFQ KYEGVILN+ + +
Sbjct: 219 KDDAMKWFQGKYEGVILNRPELI 241