Miyakogusa Predicted Gene

Lj0g3v0272389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272389.1 tr|A9BCN6|A9BCN6_PROM4 50S ribosomal protein L24
OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl,47.57,4e-19,KOW
(Kyprides, Ouzounis, Woese) motif.,KOW; rplX_bact: ribosomal protein
L24,Ribosomal protein L24; ,CUFF.18010.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g082410.1 | 50S ribosomal L24-like protein | HC | chr2:345...   291   2e-79
Medtr2g082320.1 | 50S ribosomal protein L24, putative | LC | chr...    70   9e-13
Medtr1g047130.2 | 50S ribosomal L24-like protein | HC | chr1:177...    61   6e-10
Medtr1g047130.1 | 50S ribosomal L24-like protein | HC | chr1:177...    61   6e-10

>Medtr2g082410.1 | 50S ribosomal L24-like protein | HC |
           chr2:34557590-34560700 | 20130731
          Length = 194

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 156/172 (90%)

Query: 21  FFGQRLSPITLSPRLPGKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKII 80
           FFGQ LSPITLSP LPGK  DKQC IVMKLKRWERK+CKPNSLP+LHK+HVK+GDTVK+I
Sbjct: 23  FFGQPLSPITLSPLLPGKPTDKQCRIVMKLKRWERKECKPNSLPVLHKLHVKVGDTVKVI 82

Query: 81  SGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHSSNLMLYS 140
           SGHEKG+IGEV ++FKHNST+IVKD+NLKTKHVKS++EGEPGQI K+EGPIHSSN+MLYS
Sbjct: 83  SGHEKGQIGEVTKIFKHNSTIIVKDINLKTKHVKSRQEGEPGQINKIEGPIHSSNVMLYS 142

Query: 141 KEKNVASRVGHKVLDNGKSVRYLIKTGEIIDTTENWEKLKEGKKKTAEVATT 192
           KEKNV SRVGHKV+DNGK VRYLIKTGE+ID+ ENW+KLKE  KKT E+   
Sbjct: 143 KEKNVVSRVGHKVIDNGKKVRYLIKTGEVIDSVENWKKLKEATKKTEELVAA 194


>Medtr2g082320.1 | 50S ribosomal protein L24, putative | LC |
           chr2:34583266-34583553 | 20130731
          Length = 95

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 14/76 (18%)

Query: 44  CPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKIISGHEKGKIGEVVRLFKHNSTVIV 103
           C  V     WERK+CKPNSLP+L K HVK+GDTVK+I       +    ++FKH      
Sbjct: 14  CGFVRFSASWERKECKPNSLPVLPKFHVKVGDTVKLI-------LDRFTKIFKH------ 60

Query: 104 KDMNLKTKHVKSKEEG 119
            ++NLKT+HV S+EEG
Sbjct: 61  -EINLKTEHVMSREEG 75


>Medtr1g047130.2 | 50S ribosomal L24-like protein | HC |
           chr1:17777939-17783041 | 20130731
          Length = 159

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V II G +KG+ G + R+ +  + VIV+  NL  KH+K + +G  G I  VE PIH+
Sbjct: 18  GDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVR 161
           SN+ +         +VG K L++G  VR
Sbjct: 77  SNVQVLDPVTGKPCKVGTKYLEDGTKVR 104


>Medtr1g047130.1 | 50S ribosomal L24-like protein | HC |
           chr1:17777939-17783041 | 20130731
          Length = 159

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V II G +KG+ G + R+ +  + VIV+  NL  KH+K + +G  G I  VE PIH+
Sbjct: 18  GDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVR 161
           SN+ +         +VG K L++G  VR
Sbjct: 77  SNVQVLDPVTGKPCKVGTKYLEDGTKVR 104