Miyakogusa Predicted Gene
- Lj0g3v0272299.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0272299.1 tr|A9S6C0|A9S6C0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_75160
,24.15,0.00000001,seg,NULL,CUFF.18003.1
(381 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g082940.1 | PPR containing plant protein, putative | HC | ... 406 e-113
Medtr2g082940.2 | PPR containing plant protein, putative | HC | ... 372 e-103
Medtr4g081220.1 | PPR containing plant-like protein | HC | chr4:... 281 8e-76
Medtr7g007510.1 | PPR domain protein | LC | chr7:1521936-1527121... 187 2e-47
Medtr4g081210.1 | hypothetical protein | LC | chr4:31446371-3145... 172 3e-43
Medtr7g025530.1 | PPR repeat protein | HC | chr7:8494039-8489677... 121 1e-27
Medtr7g025580.1 | PPR repeat protein | LC | chr7:8520924-8516590... 120 2e-27
>Medtr2g082940.1 | PPR containing plant protein, putative | HC |
chr2:34787790-34781597 | 20130731
Length = 523
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/390 (56%), Positives = 264/390 (67%), Gaps = 11/390 (2%)
Query: 3 MRYSYL-RNLCTGLRSRLAIN-----RGTSNPQSSSSSRLHEISTLSSLKLERPSDSGES 56
MRY ++ R +C+ R+ S+ +++ S+L S L+SL L R SDS E
Sbjct: 1 MRYFHIIRTICSPFRTHSPTKFNLHSSSFSSSSTTTHSKLDVDSILASLNLHRNSDSDEL 60
Query: 57 SDAVFKQISSIFYGGQSLEGPD-----GANESERVQNMSWLSNVSQNNILLXXXXXXXXX 111
S+AVF QISSIFYGG+S++ PD ANE ER+ N+S L N+ Q+NI L
Sbjct: 61 SEAVFHQISSIFYGGESVKRPDTEKIDAANEFERILNVSQLPNMPQSNISLRRKEVSREK 120
Query: 112 XXKFEFEFAQESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGA 171
F+ AQE+RF++LI+ CA LGTEA +ELF KVGR PG+KGYNALVEIC+ KAR A
Sbjct: 121 KRNCLFKIAQENRFRRLIESCAKILGTEATLELFDKVGRKPGVKGYNALVEICMGKAREA 180
Query: 172 DDEDIAIEEMGKVFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENP 231
++EDIAIEEMGKVF LF M +QGLK +E TYRPLLLY IDM MVEEFQFFCH+IKEE P
Sbjct: 181 ENEDIAIEEMGKVFHLFDLMKKQGLKPDEHTYRPLLLYTIDMGMVEEFQFFCHIIKEEVP 240
Query: 232 SSVTRLGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRXXXXXX 291
SS RLGYYE+MLWL+VNNEEKIQ + NYIAEND D LRE+YLLALCES+R
Sbjct: 241 SSTARLGYYEMMLWLKVNNEEKIQDLCNYIAENDADDTFYLRENYLLALCESERKENILE 300
Query: 292 XXXXXXXXXXSSAESVAKIFQALGRXXXXXXXXXXXXDFKTSNYEADNITNFIASYAVSI 351
SS S+AK+FQ LGR DFK S+Y+ DNIT FIASY VSI
Sbjct: 301 VLEIMDIKKLSSVGSIAKVFQTLGRLLLEPVAEELLLDFKASDYDEDNITTFIASYTVSI 360
Query: 352 PNLLVEDVITKFKDLHQMLEISPSSSSYEK 381
P+L VE I KFKDLH+ LE+ PSSSSYEK
Sbjct: 361 PDLSVEVGINKFKDLHEKLEVLPSSSSYEK 390
>Medtr2g082940.2 | PPR containing plant protein, putative | HC |
chr2:34787790-34783969 | 20130731
Length = 394
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/363 (55%), Positives = 243/363 (66%), Gaps = 11/363 (3%)
Query: 3 MRYSYL-RNLCTGLRSRLAIN-----RGTSNPQSSSSSRLHEISTLSSLKLERPSDSGES 56
MRY ++ R +C+ R+ S+ +++ S+L S L+SL L R SDS E
Sbjct: 1 MRYFHIIRTICSPFRTHSPTKFNLHSSSFSSSSTTTHSKLDVDSILASLNLHRNSDSDEL 60
Query: 57 SDAVFKQISSIFYGGQSLEGPD-----GANESERVQNMSWLSNVSQNNILLXXXXXXXXX 111
S+AVF QISSIFYGG+S++ PD ANE ER+ N+S L N+ Q+NI L
Sbjct: 61 SEAVFHQISSIFYGGESVKRPDTEKIDAANEFERILNVSQLPNMPQSNISLRRKEVSREK 120
Query: 112 XXKFEFEFAQESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGA 171
F+ AQE+RF++LI+ CA LGTEA +ELF KVGR PG+KGYNALVEIC+ KAR A
Sbjct: 121 KRNCLFKIAQENRFRRLIESCAKILGTEATLELFDKVGRKPGVKGYNALVEICMGKAREA 180
Query: 172 DDEDIAIEEMGKVFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENP 231
++EDIAIEEMGKVF LF M +QGLK +E TYRPLLLY IDM MVEEFQFFCH+IKEE P
Sbjct: 181 ENEDIAIEEMGKVFHLFDLMKKQGLKPDEHTYRPLLLYTIDMGMVEEFQFFCHIIKEEVP 240
Query: 232 SSVTRLGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRXXXXXX 291
SS RLGYYE+MLWL+VNNEEKIQ + NYIAEND D LRE+YLLALCES+R
Sbjct: 241 SSTARLGYYEMMLWLKVNNEEKIQDLCNYIAENDADDTFYLRENYLLALCESERKENILE 300
Query: 292 XXXXXXXXXXSSAESVAKIFQALGRXXXXXXXXXXXXDFKTSNYEADNITNFIASYAVSI 351
SS S+AK+FQ LGR DFK S+Y+ DNIT FIASY VSI
Sbjct: 301 VLEIMDIKKLSSVGSIAKVFQTLGRLLLEPVAEELLLDFKASDYDEDNITTFIASYTVSI 360
Query: 352 PNL 354
P+L
Sbjct: 361 PDL 363
>Medtr4g081220.1 | PPR containing plant-like protein | HC |
chr4:31456316-31468677 | 20130731
Length = 873
Score = 281 bits (719), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 219/396 (55%), Gaps = 18/396 (4%)
Query: 3 MRYSYLRNLCT---GLRSRLAINRGTSNPQS--------SSSSRLHEISTLSSLKLER-- 49
MR R LCT + S L N N S + H LS+LK
Sbjct: 1 MRAPISRKLCTLSSNILSHLQ-NNAKKNLSSIKISPHYEETHHHFHSDLNLSTLKHNHVP 59
Query: 50 PSDSGESSDAVFKQISSIFYGGQS----LEGPDGANESERVQNMSWLSNVSQNNILLXXX 105
P D E Q+S I + EG D + +RV + + ++ ++
Sbjct: 60 PPDEEEDLSGSDFQLSGILTSSSAEKVDCEGVDDEEKEKRVVEIPLIRDIHHCDLSKKRN 119
Query: 106 XXXXXXXXKFEFEFAQESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICI 165
K+ F+ R +L+KICA KLGT +++FG +GR G+K YN L+++CI
Sbjct: 120 ESSRERKHKWIFKDTGGERSDRLLKICAKKLGTTTTVDVFGYLGRETGVKEYNGLIKLCI 179
Query: 166 DKARGADDEDIAIEEMGKVFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHV 225
K R +DE++ IEEM K++ L K M E G ++EEQTYRPL Y+IDM V+EF+ F V
Sbjct: 180 KKVRETNDENVCIEEMNKIYNLLKLMRECGFQIEEQTYRPLFEYIIDMGFVQEFELFYDV 239
Query: 226 IKEENPSSVTRLGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDR 285
IK NPSS++RLGYYE++LW+RVNNEE I+ I YI + +D S LRESYLLALCESDR
Sbjct: 240 IKAGNPSSISRLGYYEMLLWMRVNNEEMIRDICEYITVEESKDTSALRESYLLALCESDR 299
Query: 286 XXXXXXXXXXXXXXXXSSAESVAKIFQALGRXXXXXXXXXXXXDFKTSNYEADNITNFIA 345
SA+S++ IFQ+LGR D + +Y AD I+NFIA
Sbjct: 300 KTQILDVLKNIDITKLKSAKSISNIFQSLGRLLLESEAESLLLDLRACDYGADKISNFIA 359
Query: 346 SYAVSIPNLLVEDVITKFKDLHQMLEISPSSSSYEK 381
SYAVSIPNL VED++ K ++LH +LE+ SSS+YEK
Sbjct: 360 SYAVSIPNLEVEDMVLKIENLHDVLEVLLSSSAYEK 395
>Medtr7g007510.1 | PPR domain protein | LC | chr7:1521936-1527121 |
20130731
Length = 667
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 159/265 (60%), Gaps = 9/265 (3%)
Query: 121 QESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGADDEDIAIEE 180
++ RFQ L++ LG + + G G G+N LV++ I+KAR D+ I +E+
Sbjct: 78 EQKRFQFLLE----NLGLTTLVRMIHLHGPSIGFTGFNRLVKLLIEKARSTGDKCILLEQ 133
Query: 181 MGKVFQLFKSMTEQ-GLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENPSSVTRLGY 239
+ + L +SM +LEE+TY PLL Y+IDM V+EF+ F +IK+ N +S++RLGY
Sbjct: 134 LNLIRHLLQSMPVVFRFQLEEETYGPLLKYIIDMGAVDEFKMFSKLIKDHNHNSISRLGY 193
Query: 240 YELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRXXXXXXXXXXXXXX 299
Y++++W+RVN+EE I+ YI D + S LRE+Y LALCESDR
Sbjct: 194 YDMLMWIRVNDEEMIRDACEYITIEDRKRTSKLRENYFLALCESDRKEQISDVSKNTNIT 253
Query: 300 XXSSAESVAKIFQALGRXXXXXXXXXXXXDFKTSN---YEADNITNFIASYAVSIPNLLV 356
+S +S++ I ++LGR D+ + + ++I+NFIASYAVSIPNL V
Sbjct: 254 EFAS-KSISNILKSLGRLQLKSEAEKLLLDYSEDHDDWEDYNDISNFIASYAVSIPNLEV 312
Query: 357 EDVITKFKDLHQMLEISPSSSSYEK 381
E +I + ++LH ++ ISPSSS+YEK
Sbjct: 313 EHLIKEIENLHDLMNISPSSSTYEK 337
>Medtr4g081210.1 | hypothetical protein | LC |
chr4:31446371-31450493 | 20130731
Length = 520
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 122/200 (61%), Gaps = 3/200 (1%)
Query: 117 FEFAQESRFQKLIKICALKLGTEAAIELFGKVGRVPGLKGYNALVEICIDKARGADDEDI 176
FE + R ++ K+ A LGT A + + GLK YN ++ CI K R DDE++
Sbjct: 96 FEDTRRVRADRIFKMVARNLGTTATDYVLDCLSPKQGLKEYNESIQSCIKKFRETDDENV 155
Query: 177 AIEEMGKVFQLFKSMTEQGLKLEEQTYRPLLLYVIDMHMVEEFQFFCHVIKEENPSSVTR 236
+ EEM + L KSM+E G +LEEQT RP+L Y+IDM +V+EFQ F IK NPSS++R
Sbjct: 156 SAEEMSMTYHLLKSMSENGFQLEEQTCRPILEYIIDMGLVQEFQLFYDFIKACNPSSISR 215
Query: 237 LGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESDRXXXXXXXXXXX 296
L YYE++LW+RVNNEEKI+ I YI +D L+ESYLLALC+S R
Sbjct: 216 LCYYEMLLWIRVNNEEKIRDICQYITVEHSKDTYALQESYLLALCQSGR---ILDVLKNI 272
Query: 297 XXXXXSSAESVAKIFQALGR 316
+SA+ ++ IFQ LGR
Sbjct: 273 DMEKLTSAKPISNIFQLLGR 292
>Medtr7g025530.1 | PPR repeat protein | HC | chr7:8494039-8489677 |
20130731
Length = 687
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 105/184 (57%), Gaps = 8/184 (4%)
Query: 202 TYRPLLLYVIDMHMVEEFQFFCHVIKEE--NPSSVTRLGYYELMLWLRVNNEEKIQGIYN 259
TY PLL Y+I+M V +FQ F +IK+ N S++RLGYY++++W+RVN+E I+
Sbjct: 13 TYGPLLKYIINMGDVGQFQIFSKLIKDHIHNSKSISRLGYYDMLMWIRVNDEAMIRYACE 72
Query: 260 YIAENDGQDPSNLRESYLLALCESD--RXXXXXXXXXXXXXXXXSSAESVAKIFQALGRX 317
YI + + LRE+YLLALCESD + S+ E + +F+ LGR
Sbjct: 73 YIIRGETDE---LRENYLLALCESDDRKAQISDVFKNTDVAEFTSTDEIFSNMFKLLGRL 129
Query: 318 XXXXXXXXXXXDFKTSNYEADNITNFIASYAVSIPNLLVEDVITKFKDLHQMLEISPSSS 377
D +Y + I+NFI YA SIPNL VE +I + ++LH +L+ISP+ S
Sbjct: 130 QLKSEAEKLLLDCYDEDY-LEEISNFIDIYAFSIPNLEVEHIIKEIENLHGLLKISPTFS 188
Query: 378 SYEK 381
YEK
Sbjct: 189 LYEK 192
>Medtr7g025580.1 | PPR repeat protein | LC | chr7:8520924-8516590 |
20130731
Length = 694
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 9/207 (4%)
Query: 180 EMGKVFQLFKSMTEQGLKLEEQ-TYRPLLLYVIDMHMVEEFQFFCHVIKEE--NPSSVTR 236
E+ + L +SM Q E+ TY P+L Y+I+M V +FQ F +IK+ N S++R
Sbjct: 94 ELNLIRHLLQSMPVQLELELEEETYGPVLKYIINMGDVGQFQIFSKLIKDHIHNSISISR 153
Query: 237 LGYYELMLWLRVNNEEKIQGIYNYIAENDGQDPSNLRESYLLALCESD--RXXXXXXXXX 294
LGYY++++W+RVN+E I+ YI + + LRE+YLLALCESD +
Sbjct: 154 LGYYDMLMWIRVNDEAMIRYACEYIIRGETDE---LRENYLLALCESDDRKAQISDVFKN 210
Query: 295 XXXXXXXSSAESVAKIFQALGRXXXXXXXXXXXXDFKTSNYEADNITNFIASYAVSIPNL 354
S+ E + +F+ LGR D +Y + I+NFI YA SIPNL
Sbjct: 211 TDVAEFTSTDEIFSNMFKLLGRLQLKSEAEKLLLDCYDEDY-LEEISNFIDIYAFSIPNL 269
Query: 355 LVEDVITKFKDLHQMLEISPSSSSYEK 381
VE +I + ++LH +L+ISP+ S YEK
Sbjct: 270 EVEHIIKEIENLHGLLKISPTFSLYEK 296